Factsheet for GSMUA_Achr8P24950_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr8P07200_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19430.1	GSMUA_Achr8P07200_001	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72217	Soybean	cytosol	18.64	65.81
VIT_11s0016g01910.t01	Wine grape	cytosol	54.72	60.75
EER98796	Sorghum	cytosol	54.48	59.06
TraesCS5A01G195000.2	Wheat	cytosol	54.24	58.64
CDY60743	Canola	cytosol	43.1	58.55
TraesCS5D01G198200.1	Wheat	cytosol	53.75	57.81
TraesCS5B01G190400.1	Wheat	cytosol	53.75	57.51
Zm00001d020234_P001	Maize	cytosol	52.54	56.96
KRH02681	Soybean	nucleus	51.57	56.95
KRH19216	Soybean	nucleus	51.33	56.68
Os09t0363600-01	Rice	nucleus	38.01	56.27
Bra039002.1-P	Field mustard	cytosol	48.43	55.87
CDY66907	Canola	cytosol	48.18	55.59
AT2G19430.1	Thale cress	cytosol	48.43	54.5
Solyc07g040780.2.1	Tomato	cytosol, extracellular, nucleus	10.17	51.85
HORVU5Hr1G057500.2	Barley	plastid	48.18	50.9
Solyc07g040790.2.1	Tomato	nucleus	41.16	39.08

Protein Annotations

MapMan:16.11.1.1.5	Gene3D:2.130.10.10	GO:GO:0000347	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006464
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009788
GO:GO:0009987	GO:GO:0010267	GO:GO:0016567	GO:GO:0019538	GO:GO:0031047	GO:GO:0040029
GO:GO:0080008	EnsemblPlantsGene:GSMUA_Achr8G24950_001	EnsemblPlants:GSMUA_Achr8P24950_001	EnsemblPlants:GSMUA_Achr8T24950_001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:M0TTE8	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR42968	PANTHER:PTHR42968:SF3	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000296458B	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

WD repeat-containing protein DWA1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G24950_001]

Coordinates

chr8:+:28925324..28940642

Molecular Weight (calculated)

45372.6 Da

IEP (calculated)

7.129

GRAVY (calculated)

-0.361

Length

413 amino acids

Sequence
(BLAST)

001: MKPPEALLHR SHGAAPNHPR PEQNPNRSTM RRRRRRRRRR RRRPVMPEMA TEGNGGCDAR DWDEEGYRKS ILQERELRCR TVFRTAFAPS QSPNPETVVV
101: ASSDGAVASY SLATLPGPLL AEPLFIIKGH KGPAYDLKFY WQGEECLLFS CGDDGHLRGW NWKELLNSDI HGDMQGNSLK PILDLANPQH EGPWGALSPI
201: PENNAIAIDE QEGSVFSAAG DACAYSWDVE TGKQKMVFKG HADYLHCITA RKSCHQIITG SEDGTTRIWD CRSGICTQVI RPEKNFKSKV SSWVSCVATD
301: TSESWLACGT STGLSVWSLL SSECIFSINS HSPVQDLLFD DHQILAVGSE PVLTRFSING AALSQIKCAP QSAFSVSLHP SGVIAIGGYG ALVDVLSQYG
401: SHLCTFCCAG LDT

Best Arabidopsis Sequence Match ( AT2G19430.1 )
(BLAST)

001: MYGDATNWNE DEYRESILKE REIETRTVFR TAWAPPARIS NPDAFVVASS DGTLAFHSLN SLVSQSASFG YSKGQDVMVA EPERVVRAHE GPAYDVKFYG
101: EDEDALLLSC GDDGRVRGWK WREFAESDVS LHLKENHLKP LLELINPQHK GPWGALSPMP EINAMSVDPQ SGSVFTAAGD SCAYCWDVES GKIKMTFKGH
201: SDYLHTVVSR SSASQILTGS EDGTARIWDC KTGKCVKVIG SQDKKSRLRV SSMALDGSES WLVCGQGKNL ALWNLPASEC VQTIPIPAHV QDVMFDEKQI
301: LTVGAEPLLR RFDLNGALLS QIHCAPCSVF SISLHPAGVV AVGGYGGIVD VISQFGSHLC TFRSSSL

Arabidopsis Description

THO6THO complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4M1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.