Factsheet for VIT_11s0016g01910.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g02200.t01
VIT_10s0003g04360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19430.1	VIT_01s0026g02200.t01	AT1G69690.1	21798944
AT2G19430.1	VIT_10s0003g04360.t01	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72217	Soybean	cytosol	22.31	70.94
KRH19216	Soybean	nucleus	68.55	68.18
KRH02681	Soybean	nucleus	67.74	67.38
CDY66907	Canola	cytosol	62.63	65.08
Bra039002.1-P	Field mustard	cytosol	62.37	64.8
CDY60743	Canola	cytosol	52.15	63.82
AT2G19430.1	Thale cress	cytosol	61.83	62.67
Solyc07g040780.2.1	Tomato	cytosol, extracellular, nucleus	13.44	61.73
Os09t0363600-01	Rice	nucleus	43.01	57.35
EER98796	Sorghum	cytosol	58.6	57.22
TraesCS5A01G195000.2	Wheat	cytosol	58.06	56.54
Zm00001d020234_P001	Maize	cytosol	57.8	56.43
TraesCS5D01G198200.1	Wheat	cytosol	58.06	56.25
TraesCS5B01G190400.1	Wheat	cytosol	58.06	55.96
GSMUA_Achr8P24950_001	Banana	nucleus	60.75	54.72
HORVU5Hr1G057500.2	Barley	plastid	51.88	49.36
Solyc07g040790.2.1	Tomato	nucleus	57.26	48.97

Protein Annotations

MapMan:16.11.1.1.5	Gene3D:2.130.10.10	ProteinID:CBI27884	ProteinID:CBI27884.3	UniProt:D7TCM6	EMBL:FN595756
GO:GO:0000347	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009788	GO:GO:0009987	GO:GO:0010267
GO:GO:0016567	GO:GO:0019538	GO:GO:0031047	GO:GO:0040029	GO:GO:0080008	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR42968	PANTHER:PTHR42968:SF3	SMART:SM00320	SUPFAM:SSF50978	TIGR:TC55703	UniParc:UPI00015C8807
ArrayExpress:VIT_11s0016g01910	EnsemblPlantsGene:VIT_11s0016g01910	EnsemblPlants:VIT_11s0016g01910.t01	unigene:Vvi.18040	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr11:+:1547129..1557535

Molecular Weight (calculated)

40468.7 Da

IEP (calculated)

6.040

GRAVY (calculated)

-0.172

Length

372 amino acids

Sequence
(BLAST)

001: MGSDARDWDE DGYRNSILKE REIQTRTVFR AIFAPSQNPN PDVIVVASSD GTLASYSISS CISQLSGFGN ARPRKSLLGL PVAEPNCFLQ GHDGPAYDVK
101: FYGDGEESLL LSCGDDGRIR GWRWKEITQS EVHIPLQGNH VEPVLDLVNP QHKGPWGALS PVPENNAIAV NAQWGSVFAA AGDSCAYCWD VEKSKIKMVF
201: KGHSDYLHCI IARNSSNQII TGSEDGTARI WDCQSGKCIQ VIDAKKDKKP KEIFSCVSCI ALDASESWLA YGRGRSLSVW NLPACERVTR VSTHASFQDI
301: VFDDNQILAV GAEPLLSRFD INGVILSQIQ CAPQSAFSVS LHPSGVTAVA GYGGVVDVIS QFGSHLCTFR GR

Best Arabidopsis Sequence Match ( AT2G19430.1 )
(BLAST)

001: MYGDATNWNE DEYRESILKE REIETRTVFR TAWAPPARIS NPDAFVVASS DGTLAFHSLN SLVSQSASFG YSKGQDVMVA EPERVVRAHE GPAYDVKFYG
101: EDEDALLLSC GDDGRVRGWK WREFAESDVS LHLKENHLKP LLELINPQHK GPWGALSPMP EINAMSVDPQ SGSVFTAAGD SCAYCWDVES GKIKMTFKGH
201: SDYLHTVVSR SSASQILTGS EDGTARIWDC KTGKCVKVIG SQDKKSRLRV SSMALDGSES WLVCGQGKNL ALWNLPASEC VQTIPIPAHV QDVMFDEKQI
301: LTVGAEPLLR RFDLNGALLS QIHCAPCSVF SISLHPAGVV AVGGYGGIVD VISQFGSHLC TFRSSSL

Arabidopsis Description

THO6THO complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4M1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.