CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99108
KRH25071
KRH43086
KRH45889
KRH59212
KRH59213

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19430.1	KRG99108	AT1G69690.1	21798944
AT2G19430.1	KRH45889	AT1G69690.1	21798944
AT2G19430.1	KRH25071	AT4G05420.1	18223036
AT2G19430.1	KRH43086	AT4G05420.1	18223036
AT2G19430.1	KRH59212	AT4G05420.1	18223036
AT2G19430.1	KRH59213	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19216	Soybean	nucleus	95.19	95.19
KRH72217	Soybean	cytosol	26.74	85.47
VIT_11s0016g01910.t01	Wine grape	cytosol	67.38	67.74
Bra039002.1-P	Field mustard	cytosol	61.23	63.97
CDY66907	Canola	cytosol	61.23	63.97
AT2G19430.1	Thale cress	cytosol	62.57	63.76
CDY60743	Canola	cytosol	50.8	62.5
Os09t0363600-01	Rice	nucleus	42.51	56.99
EER98796	Sorghum	cytosol	55.62	54.59
TraesCS5D01G198200.1	Wheat	cytosol	55.35	53.91
Zm00001d020234_P001	Maize	cytosol	54.81	53.81
TraesCS5A01G195000.2	Wheat	cytosol	54.81	53.66
TraesCS5B01G190400.1	Wheat	cytosol	55.35	53.63
Solyc07g040780.2.1	Tomato	cytosol, extracellular, nucleus	11.23	51.85
GSMUA_Achr8P24950_001	Banana	nucleus	56.95	51.57
HORVU5Hr1G057500.2	Barley	plastid	49.2	47.06
Solyc07g040790.2.1	Tomato	nucleus	54.01	46.44

Protein Annotations

MapMan:16.11.1.1.5	Gene3D:2.130.10.10	EMBL:ACUP02010313	EnsemblPlantsGene:GLYMA_17G053100	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K7MK24	EnsemblPlants:KRH02681
ProteinID:KRH02681	ProteinID:KRH02681.1	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR42968	PANTHER:PTHR42968:SF3	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00023D6068	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr17:+:4039655..4046333

Molecular Weight (calculated)

40558.6 Da

IEP (calculated)

4.597

GRAVY (calculated)

-0.127

Length

374 amino acids

Sequence
(BLAST)

001: MCGDATNWDE DAYRETILKE REIQTRTVFR TAWAPPYTSN LDTLILASSD GSVASYSISS SIAASKIKNP FGFVNADTDE LLAEPNCFVQ AHDGPAYDVR
101: FYGDGEDALL LSCGDDGRIR GWRWNEFSSS NYSVSSQGND IKPVLDVVNP QHKGPWGALS PIPENNAIAV NTQGGSVFAA SGDSCAYCWD VETGKVKMVF
201: KGHMDYLHCI VARNSLDQII TGSEDGTTRI WDCKSGKCTQ VIDPARDLKL KGSASWVGCV ALDASESWLA CSSGRNISLW NLPASECISK IPTRACVQDM
301: LFDNNQILTV GTDPLLNRFD MNGTILSQIQ CAPSSSFSIS LHPAGVMAVG GYGCLVDVIS QFGSHMCTFH CQCF

Best Arabidopsis Sequence Match ( AT2G19430.1 )
(BLAST)

001: MYGDATNWNE DEYRESILKE REIETRTVFR TAWAPPARIS NPDAFVVASS DGTLAFHSLN SLVSQSASFG YSKGQDVMVA EPERVVRAHE GPAYDVKFYG
101: EDEDALLLSC GDDGRVRGWK WREFAESDVS LHLKENHLKP LLELINPQHK GPWGALSPMP EINAMSVDPQ SGSVFTAAGD SCAYCWDVES GKIKMTFKGH
201: SDYLHTVVSR SSASQILTGS EDGTARIWDC KTGKCVKVIG SQDKKSRLRV SSMALDGSES WLVCGQGKNL ALWNLPASEC VQTIPIPAHV QDVMFDEKQI
301: LTVGAEPLLR RFDLNGALLS QIHCAPCSVF SISLHPAGVV AVGGYGGIVD VISQFGSHLC TFRSSSL

Arabidopsis Description

THO6THO complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4M1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.