Factsheet for Bra039002.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003986.1-P
Bra004407.1-P
Bra007875.1-P
Bra010996.1-P
Bra012474.1-P
Bra024741.1-P
Bra029577.1-P
Bra035030.1-P
Bra039992.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19430.1	Bra010996.1-P	AT1G25490.1	21798944
AT2G19430.1	Bra012474.1-P	AT1G25490.1	21798944
AT2G19430.1	Bra024741.1-P	AT1G25490.1	21798944
AT2G19430.1	Bra035030.1-P	AT1G25490.1	21798944
AT2G19430.1	Bra039992.1-P	AT1G25490.1	21798944
AT2G19430.1	Bra003986.1-P	AT1G69690.1	21798944
AT2G19430.1	Bra004407.1-P	AT1G69690.1	21798944
AT2G19430.1	Bra007875.1-P	AT1G69690.1	21798944
AT2G19430.1	Bra029577.1-P	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66907	Canola	cytosol	96.65	96.65
AT2G19430.1	Thale cress	cytosol	88.27	86.1
VIT_11s0016g01910.t01	Wine grape	cytosol	64.8	62.37
KRH19216	Soybean	nucleus	64.53	61.76
KRH02681	Soybean	nucleus	63.97	61.23
Solyc07g040780.2.1	Tomato	cytosol, extracellular, nucleus	13.13	58.02
KRH72217	Soybean	cytosol	17.32	52.99
EER98796	Sorghum	cytosol	51.68	48.56
TraesCS5A01G195000.2	Wheat	cytosol	51.68	48.43
GSMUA_Achr8P24950_001	Banana	nucleus	55.87	48.43
TraesCS5B01G190400.1	Wheat	cytosol	51.4	47.67
TraesCS5D01G198200.1	Wheat	cytosol	51.12	47.66
Zm00001d020234_P001	Maize	cytosol	50.56	47.51
Os09t0363600-01	Rice	nucleus	36.31	46.59
HORVU5Hr1G057500.2	Barley	plastid	47.21	43.22
Solyc07g040790.2.1	Tomato	nucleus	50.28	41.38

Protein Annotations

MapMan:16.11.1.1.5	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra039002	EnsemblPlants:Bra039002.1	EnsemblPlants:Bra039002.1-P	ncoils:Coil
GO:GO:0000347	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009788	GO:GO:0009987	GO:GO:0010267
GO:GO:0016567	GO:GO:0019538	GO:GO:0031047	GO:GO:0040029	GO:GO:0080008	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	UniProt:M4FD32	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR42968	PANTHER:PTHR42968:SF3	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002541012
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

AT2G19430 (E=4e-188) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA07:-:885422..887779

Molecular Weight (calculated)

38896.7 Da

IEP (calculated)

4.978

GRAVY (calculated)

-0.187

Length

358 amino acids

Sequence
(BLAST)

001: MYGDATNWNE DEYRESILKE REIQTRTVFR TAWAPNPNPD AFVVASSDGT LAFHSMSSLV SQSAAFGYSK GEDFMVAAPE GVVRAHEGPA YDVKFYGEDE
101: DALLLSCGDD GRVRGWKWRD FADSTENLVK PLLELTNPQH KGPWGALSPM PEINAISVDP QSASVYTAAG DSCAYCWDME SGKIKMTFKG HSDYLHCLVS
201: RSSASQILTG SEDGTARIWD CKTGKCIKVI GSQEKKSRFR ISSIALDESE SWLACGQGKN IAVWNLPASE CVSTISSPAH VQDVMFDEKQ ILSVGAEPLL
301: RRFDLNGALL SQIHCAPSSA FSVSLHPAGV IAVGGYGGLV DVISQFGSHL CTFRSSLL

Best Arabidopsis Sequence Match ( AT2G19430.1 )
(BLAST)

001: MYGDATNWNE DEYRESILKE REIETRTVFR TAWAPPARIS NPDAFVVASS DGTLAFHSLN SLVSQSASFG YSKGQDVMVA EPERVVRAHE GPAYDVKFYG
101: EDEDALLLSC GDDGRVRGWK WREFAESDVS LHLKENHLKP LLELINPQHK GPWGALSPMP EINAMSVDPQ SGSVFTAAGD SCAYCWDVES GKIKMTFKGH
201: SDYLHTVVSR SSASQILTGS EDGTARIWDC KTGKCVKVIG SQDKKSRLRV SSMALDGSES WLVCGQGKNL ALWNLPASEC VQTIPIPAHV QDVMFDEKQI
301: LTVGAEPLLR RFDLNGALLS QIHCAPCSVF SISLHPAGVV AVGGYGGIVD VISQFGSHLC TFRSSSL

Arabidopsis Description

THO6THO complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4M1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.