Factsheet for Bra035030.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002763.1-P
Bra003346.1-P
Bra006834.1-P
Bra007407.1-P
Bra008105.1-P
Bra014874.1-P
Bra015983.1-P
Bra020012.1-P
Bra024329.1-P
Bra026114.1-P
Bra028713.1-P
Bra032371.1-P
Bra033870.1-P
Bra035648.1-P
Bra037327.1-P
Bra037797.1-P
Bra039379.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25490.1	Bra026114.1-P	AT1G15730.1	21798944
AT1G25490.1	Bra014874.1-P	AT1G30260.1	21798944
AT1G25490.1	Bra032371.1-P	AT1G30260.1	21798944
AT1G25490.1	Bra033870.1-P	AT1G31870.1	21798944
AT1G25490.1	Bra008105.1-P	AT1G73590.1	17889649
AT1G25490.1	Bra015983.1-P	AT1G73590.1	17889649
AT1G25490.1	Bra039379.1-P	AT3G13222.1	21798944
AT1G25490.1	Bra003346.1-P	AT3G58630.1	21798944
AT1G25490.1	Bra007407.1-P	AT3G58630.1	21798944
AT1G25490.1	Bra020012.1-P	AT4G00231.1	21798944
AT1G25490.1	Bra037327.1-P	AT4G00231.1	21798944
AT1G25490.1	Bra028713.1-P	AT5G06960.1	21798944
AT1G25490.1	Bra002763.1-P	AT5G57090.1	17889649
AT1G25490.1	Bra006834.1-P	AT5G57090.1	17889649
AT1G25490.1	Bra035648.1-P	AT5G57090.1	17889649
AT1G25490.1	Bra024329.1-P	AT5G64813.1	21798944
AT1G25490.1	Bra037797.1-P	AT5G64813.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70440	Canola	cytosol	99.36	100.0
Bra039992.1-P	Field mustard	cytosol	84.62	99.25
CDX87453	Canola	cytosol	84.62	85.71
CDY31621	Canola	endoplasmic reticulum, extracellular	72.44	71.07
CDY35849	Canola	plasma membrane	60.26	69.63
Bra024741.1-P	Field mustard	cytosol	79.49	37.69
AT1G25490.1	Thale cress	cytosol	78.85	20.92
Bra010996.1-P	Field mustard	cytosol	76.28	20.24
Bra012474.1-P	Field mustard	cytosol	73.08	19.45
Bra017348.1-P	Field mustard	cytosol	29.49	17.76
Bra025162.1-P	Field mustard	cytosol	19.23	3.9

Protein Annotations

EnsemblPlants:Bra035030.1	EnsemblPlants:Bra035030.1-P	EnsemblPlantsGene:Bra035030	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:HEAT_type_2	InterPro:IPR011989	InterPro:IPR021133	PANTHER:PTHR10648
PANTHER:PTHR10648:SF20	PFscan:PS50077	SUPFAM:SSF48371	UniParc:UPI0002541BF3	UniProt:M4F1T3	MapMan:35.1

Description

AT1G25490 (E=2e-062) RCN1, REGA, ATB BETA BETA, EER1 | RCN1 (ROOTS CURL IN NPA); protein phosphatase type 2A regulator

Coordinates

chrA07:+:21854311..21855406

Molecular Weight (calculated)

17480.1 Da

IEP (calculated)

4.498

GRAVY (calculated)

-0.028

Length

156 amino acids

Sequence
(BLAST)

001: MVADSIEKGT EHEDEYMISE KELLVYSIRE AAANNLKRFA EEFGPEWAMQ HLVPQVLDMV TNPHYLHRMM VLRAISLMAP VMGSEITCSK FLPVVAEASK
101: DRVPNVKFNV AKLLQSLIPI VDQSCLVDLS EDPDVDVRYF ANQALRSIDD AAAAQS

Best Arabidopsis Sequence Match ( AT1G25490.1 )
(BLAST)

001: MAMVDEPLYP IAVLIDELKN DDIQLRLNSI RRLSTIARAL GEERTRKELI PFLSENSDDD DEVLLAMAEE LGVFIPFVGG IEFAHVLLPP LESLCTVEET
101: CVREKAVESL CKIGSQMKEN DLVESFVPLV KRLAGGEWFA ARVSACGIFH VAYQGCTDVL KTELRATYSQ LCKDDMPMVR RAAASNLGKF ATTVESTFLI
201: AEIMTMFDDL TKDDQDSVRL LAVEGCAALG KLLEPQDCVA RILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPDCTRTD LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFCRL LNPELAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPIL GKDSTIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY VPLLASQLGI GFFDDKLGAL CMQWLQDKVY SIREAAANNL KRLAEEFGPE WAMQHLVPQV LDMVNNPHYL HRMMVLRAIS
501: LMAPVMGSEI TCSKFLPVVV EASKDRVPNI KFNVAKLLQS LIPIVDQSVV DKTIRQCLVD LSEDPDVDVR YFANQALNSI DGSTAAQS

Arabidopsis Description

PP2AA1Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38845]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.