Factsheet for Bra015983.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
golgi 5
plasma membrane 6
endoplasmic reticulum 4
vacuole 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005403.1-P
Bra010996.1-P
Bra012474.1-P
Bra017216.1-P
Bra021925.1-P
Bra023087.1-P
Bra024741.1-P
Bra025359.1-P
Bra035030.1-P
Bra039042.1-P
Bra039992.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73590.1	Bra010996.1-P	AT1G25490.1	17889649
AT1G73590.1	Bra012474.1-P	AT1G25490.1	17889649
AT1G73590.1	Bra024741.1-P	AT1G25490.1	17889649
AT1G73590.1	Bra035030.1-P	AT1G25490.1	17889649
AT1G73590.1	Bra039992.1-P	AT1G25490.1	17889649
AT1G73590.1	Bra005403.1-P	AT2G34650.1	17889649
AT1G73590.1	Bra021925.1-P	AT2G34650.1	17889649
AT1G73590.1	Bra017216.1-P	AT2G36910.1	17237354
AT1G73590.1	Bra023087.1-P	AT2G36910.1	17237354
AT1G73590.1	Bra025359.1-P	AT3G28860.1	17237354
AT1G73590.1	Bra039042.1-P	AT3G28860.1	17237354

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96484	Canola	plasma membrane	86.41	99.81
CDY72296	Canola	golgi, plasma membrane	69.9	95.36
Bra008105.1-P	Field mustard	golgi, plasma membrane	93.04	93.34
AT1G73590.1	Thale cress	plasma membrane	92.72	92.12
KRH48642	Soybean	plasma membrane	74.76	76.36
VIT_17s0000g02420.t01	Wine grape	plasma membrane	72.49	75.42
KRH41847	Soybean	golgi, plasma membrane	73.3	75.12
KRH39071	Soybean	plasma membrane	50.97	75.0
Solyc03g118740.2.1	Tomato	golgi, plasma membrane	72.82	73.65
PGSC0003DMT400014752	Potato	golgi, plasma membrane	72.49	72.96
Bra012358.1-P	Field mustard	golgi, plasma membrane	61.81	63.35
Bra016366.1-P	Field mustard	golgi, plasma membrane	56.47	59.76
Bra002763.1-P	Field mustard	plasma membrane	56.8	58.99
Bra006834.1-P	Field mustard	plasma membrane	60.19	57.94
Bra003938.1-P	Field mustard	golgi, plasma membrane	50.97	57.69
Bra035648.1-P	Field mustard	plasma membrane	59.71	55.82
Bra016173.1-P	Field mustard	plasma membrane	56.15	54.91
Bra008615.1-P	Field mustard	golgi, plasma membrane, vacuole	27.99	49.71
Bra015694.1-P	Field mustard	plasma membrane	46.12	49.65
Bra008722.1-P	Field mustard	golgi, plasma membrane, vacuole	26.54	48.09
Bra026669.1-P	Field mustard	golgi, plasma membrane	57.61	44.67
Bra023503.1-P	Field mustard	golgi, plasma membrane	23.46	24.29

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	EnsemblPlantsGene:Bra015983	EnsemblPlants:Bra015983.1	EnsemblPlants:Bra015983.1-P
GO:GO:0005575	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009719
GO:GO:0009734	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	UniProt:M4DHK6
InterPro:Mem_trans	PFAM:PF03547	PANTHER:PTHR31752	PANTHER:PTHR31752:SF14	TIGRFAMs:TIGR00946	TMHMM:TMhelix
UniParc:UPI0002541D3C	SEG:seg	:	:	:	:

Description

AT1G73590 (E=1e-313) PIN1, ATPIN1 | PIN1 (PIN-FORMED 1); transporter

Coordinates

chrA07:+:19949892..19952957

Molecular Weight (calculated)

66686.8 Da

IEP (calculated)

9.376

GRAVY (calculated)

0.131

Length

618 amino acids

Sequence
(BLAST)

001: MITATDFYHV MTAMVPLYVA MILAYGSVKW WKIFTPDQCS GINRFVALFA VPLLSFHFIA ANNPYAMNLR FLAADSLQKI IVLCLLFLWC KISRTGSLDW
101: TITLFSLTTL PNTLVMGIPL LKGMYGEFSG ELMVQIVVLQ CIIWYTLMLF LFEYRGAKLL ISEQFPDTAG SIVSIHVDSD IMSLDGRQPL ETEAEIKEDG
201: KLHVTVRRSN ASRSDIYSRR SQGLSATPRP SNLTNAEIYS LQSSRNPTPR GSSFNHTDFY SMMGAAAGGG RNSNFGPGEA VFGSKGPTPR PSNYEEDGGA
301: KPPAGGGAGR FHHQSGGSGA HYPAPNPGMF SPQTGGGAAA AKGSVPVGGG KRGSGQDGNG RDLHMFVWSS SASPVSDVFG GGANHHADYA AANNDLHKDV
401: KISVPQGNSN DNQHVDREEF SFGNKDDDSK VLATDGVNNI SNKSQQQAKV MPPTSVMTRL ILIMVWRKLI RNPNSYSSLF GITWSLISFK WNIEMPAIIA
501: KSISILSDAG LGMAMFSLGL FMALNPKIIA CGNRKAAFAA GMRFLVGPAV MVVASYAVGL RGVLLRVAII QAALPQGIVP FVFAKEYNVH PSILSTAVIF
601: GMLIALPITL LYYILLGL

Best Arabidopsis Sequence Match ( AT1G73590.1 )
(BLAST)

001: MITAADFYHV MTAMVPLYVA MILAYGSVKW WKIFTPDQCS GINRFVALFA VPLLSFHFIA ANNPYAMNLR FLAADSLQKV IVLSLLFLWC KLSRNGSLDW
101: TITLFSLSTL PNTLVMGIPL LKGMYGNFSG DLMVQIVVLQ CIIWYTLMLF LFEYRGAKLL ISEQFPDTAG SIVSIHVDSD IMSLDGRQPL ETEAEIKEDG
201: KLHVTVRRSN ASRSDIYSRR SQGLSATPRP SNLTNAEIYS LQSSRNPTPR GSSFNHTDFY SMMASGGGRN SNFGPGEAVF GSKGPTPRPS NYEEDGGPAK
301: PTAAGTAAGA GRFHYQSGGS GGGGGAHYPA PNPGMFSPNT GGGGGTAAKG NAPVVGGKRQ DGNGRDLHMF VWSSSASPVS DVFGGGGGNH HADYSTATND
401: HQKDVKISVP QGNSNDNQYV EREEFSFGNK DDDSKVLATD GGNNISNKTT QAKVMPPTSV MTRLILIMVW RKLIRNPNSY SSLFGITWSL ISFKWNIEMP
501: ALIAKSISIL SDAGLGMAMF SLGLFMALNP RIIACGNRRA AFAAAMRFVV GPAVMLVASY AVGLRGVLLH VAIIQAALPQ GIVPFVFAKE YNVHPDILST
601: AVIFGMLIAL PITLLYYILL GL

Arabidopsis Description

PIN1Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178WFG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.