Factsheet for Bra016366.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

cytosol 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra034407.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23080.1	Bra034407.1-P	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41467	Canola	plasma membrane	99.32	99.32
Bra012358.1-P	Field mustard	golgi, plasma membrane	85.79	83.08
AT1G23080.1	Thale cress	plasma membrane	84.93	80.13
Bra003938.1-P	Field mustard	golgi, plasma membrane	69.01	73.81
Bra016173.1-P	Field mustard	plasma membrane	73.46	67.88
VIT_01s0011g04860.t01	Wine grape	golgi, plasma membrane	75.34	67.8
Solyc04g007690.2.1	Tomato	plasma membrane	70.89	67.54
KRH38202	Soybean	plasma membrane	73.29	67.51
PGSC0003DMT400078330	Potato	golgi, plasma membrane	74.49	66.51
Solyc05g008060.2.1	Tomato	nucleus	74.32	66.46
KRH50369	Soybean	plasma membrane	75.51	66.32
KRG89296	Soybean	plasma membrane	75.17	65.92
KRH49577	Soybean	plasma membrane	61.64	64.75
GSMUA_Achr8P29780_001	Banana	golgi, plasma membrane, vacuole	52.23	63.02
PGSC0003DMT400015267	Potato	cytosol	48.46	60.99
GSMUA_Achr7P17140_001	Banana	plasma membrane	59.93	60.14
GSMUA_Achr1P25190_001	Banana	golgi, plasma membrane, vacuole	61.47	59.14
TraesCS3D01G221900.1	Wheat	plasma membrane	59.59	58.98
TraesCS3A01G231500.1	Wheat	plasma membrane	58.9	57.82
Os01t0643300-01	Rice	golgi, plasma membrane, vacuole	60.96	57.61
Zm00001d044083_P001	Maize	plasma membrane	60.1	57.54
Bra015983.1-P	Field mustard	plasma membrane	59.76	56.47
Bra008105.1-P	Field mustard	golgi, plasma membrane	59.25	56.17
EES01159	Sorghum	golgi, plasma membrane	59.93	53.6
Bra026669.1-P	Field mustard	golgi, plasma membrane	72.95	53.45
Bra002763.1-P	Field mustard	plasma membrane	54.28	53.28
Bra006834.1-P	Field mustard	plasma membrane	56.85	51.71
Zm00001d045219_P001	Maize	plasma membrane	51.37	51.64
EER89254	Sorghum	golgi, plasma membrane, vacuole	52.23	50.83
Bra035648.1-P	Field mustard	plasma membrane	57.02	50.38
TraesCS1D01G422900.1	Wheat	golgi, plasma membrane, vacuole	51.37	50.34
TraesCS1B01G445400.1	Wheat	golgi, plasma membrane, vacuole	51.37	50.25
TraesCS3B01G260700.1	Wheat	plasma membrane	52.4	50.25
Os05t0576900-01	Rice	golgi, plasma membrane, vacuole	50.68	50.08
TraesCS1A01G415400.1	Wheat	golgi, plasma membrane, vacuole	50.86	49.58
Bra008722.1-P	Field mustard	golgi, plasma membrane, vacuole	27.91	47.8
Bra008615.1-P	Field mustard	golgi, plasma membrane, vacuole	28.08	47.13
Bra015694.1-P	Field mustard	plasma membrane	45.89	46.69
Bra023503.1-P	Field mustard	golgi, plasma membrane	25.68	25.13
HORVU7Hr1G038700.9	Barley	nucleus, plastid	23.8	20.0

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	EnsemblPlantsGene:Bra016366	EnsemblPlants:Bra016366.1	EnsemblPlants:Bra016366.1-P
GO:GO:0005575	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009719
GO:GO:0009734	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	UniProt:M4DIN9
InterPro:Mem_trans	PFAM:PF03547	PANTHER:PTHR31752	PANTHER:PTHR31752:SF36	TIGRFAMs:TIGR00946	TMHMM:TMhelix
UniParc:UPI00025465BE	SEG:seg	:	:	:	:

Description

AT2G01420 (E=1e-226) PIN4, ATPIN4 | PIN4 (PIN-FORMED 4); auxin:hydrogen symporter/ transporter

Coordinates

chrA08:+:18063753..18066265

Molecular Weight (calculated)

63738.8 Da

IEP (calculated)

8.149

GRAVY (calculated)

0.270

Length

584 amino acids

Sequence
(BLAST)

001: MITWHDLCTV LTAVIPLYFA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS TNNPYAINLR FIAADTLQKL IMLTLLTLWA NFTHSGSLEW
101: SITIFSLSTL PDTLVMGIPL LTAMYGEYSC SLMVQVVVLQ CIVWYTILLF LFEYRGAKIL IMEQFPETAA SIVSFKVHSD VVSLDGNDLL ETDAEIGGDG
201: KLHVTVRKSN ASRRFLCCPS MTPRPSNITG AEIYSLDTTP RGSNFNQSDS YSVMGFSGGR LSNFGQSSRG QTPGPSNFEV SCGMASSPGL GYDPGTSGSY
301: LALNAEFSSL VANKTVSKNH HTRGKSSSSH DAKELHMFVW GSNGGSDQGA KEIRMIVPEP PQNAETKATG PRNIDFGGEE ESERVKEVAT GRNKLQCNSM
401: AELNPREAVE TVPVKHMPPA SVMTRLIVKM VWRKLTRNPN TYSSLIGLIW ALVAFRWNVA MPRIIQQSIS ILSDAGLGMA MFSLGLFMAL EPKLIACGNS
501: TATFAMAVRF LTGPAVMAVA AMAIGLRGDL LRVAIVQAAL PQGIMPFVFA KEYNVHPAIL STGVIFGMLI ALPITLVYYI LLGL

Best Arabidopsis Sequence Match ( AT1G23080.1 )
(BLAST)

001: MITWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS SNNPYAMNLR FIAADTLQKL IMLTLLIIWA NFTRSGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEYRGAKIL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAQIGDDG
201: KLHVTVRKSN ASRRSFYGGG GTNMTPRPSN LTGAEIYSLN TTPRGSNFNH SDFYSMMGFP GGRLSNFGPA DMYSVQSSRG PTPRPSNFEE SCAMASSPRF
301: GYYPGGAPGS YPAPNPEFST GNKTGSKAPK ENHHHVGKSN SNDAKELHMF VWGSNGSPVS DRAGLQVDNG ANEQVGKSDQ GGAKEIRMLI SDHTQNGENK
401: AGPMNGDYGG EEESERVKEV PNGLHKLRCN STAELNPKEA IETGETVPVK HMPPASVMTR LILIMVWRKL IRNPNTYSSL IGLIWALVAF RWDVAMPKII
501: QQSISILSDA GLGMAMFSLG LFMALQPKLI ACGNSTATFA MAVRFFTGPA VMAVAAMAIG LRGDLLRVAI VQAALPQGIV PFVFAKEYNV HPAILSTGVI
601: FGMLIALPIT LVYYILLGL

Arabidopsis Description

PIN7Auxin efflux carrier component 7 [Source:UniProtKB/Swiss-Prot;Acc:Q940Y5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.