Factsheet for TraesCS1A01G415400.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23080.1	TraesCS4A01G206200.2	AT1G35670.1	19130088
AT1G23080.1	TraesCS4B01G109800.2	AT1G35670.1	19130088
AT1G23080.1	TraesCS4D01G107200.1	AT1G35670.1	19130088
AT1G23080.1	TraesCS5A01G107900.1	AT1G35670.1	19130088
AT1G23080.1	TraesCS5B01G115400.1	AT1G35670.1	19130088
AT1G23080.1	TraesCS5D01G122800.1	AT1G35670.1	19130088
AT1G23080.1	TraesCS4A01G206200.2	AT4G09570.1	19130088
AT1G23080.1	TraesCS4B01G109800.2	AT4G09570.1	19130088
AT1G23080.1	TraesCS4D01G107200.1	AT4G09570.1	19130088
AT1G23080.1	TraesCS5A01G107900.1	AT4G09570.1	19130088
AT1G23080.1	TraesCS5B01G115400.1	AT4G09570.1	19130088
AT1G23080.1	TraesCS5D01G122800.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G445400.1	Wheat	golgi, plasma membrane, vacuole	95.33	95.64
TraesCS1D01G422900.1	Wheat	golgi, plasma membrane, vacuole	95.16	95.64
HORVU1Hr1G091030.2	Barley	golgi, plasma membrane, vacuole	88.65	87.48
HORVU1Hr1G072970.9	Barley	golgi, plasma membrane, vacuole	81.97	83.93
Zm00001d045219_P001	Maize	plasma membrane	66.11	68.16
Os05t0576900-01	Rice	golgi, plasma membrane, vacuole	66.78	67.68
EER89254	Sorghum	golgi, plasma membrane, vacuole	66.44	66.33
GSMUA_Achr8P29780_001	Banana	golgi, plasma membrane, vacuole	48.91	60.54
TraesCS3A01G231500.1	Wheat	plasma membrane	58.6	58.99
CDX96288	Canola	golgi, plasma membrane	55.76	57.29
CDY25767	Canola	plasma membrane	54.76	57.24
CDY68262	Canola	plasma membrane	55.59	57.02
CDY40380	Canola	plasma membrane	53.42	56.94
CDY63826	Canola	plasma membrane	53.42	56.84
CDX68327	Canola	plasma membrane	45.74	56.49
CDY12491	Canola	plasma membrane	54.09	56.45
CDY23471	Canola	golgi, plasma membrane	46.24	56.19
TraesCS6A01G308600.1	Wheat	plasma membrane	53.92	54.93
Bra012358.1-P	Field mustard	golgi, plasma membrane	55.26	54.89
TraesCS7A01G190600.1	Wheat	plasma membrane	53.76	54.86
TraesCS4A01G188100.1	Wheat	plasma membrane	51.59	54.4
KRH38202	Soybean	plasma membrane	56.26	53.15
AT1G23080.1	Thale cress	plasma membrane	54.92	53.15
CDX91695	Canola	plasma membrane	50.42	52.89
Solyc04g007690.2.1	Tomato	plasma membrane	53.92	52.69
AT2G01420.2	Thale cress	plasma membrane	54.09	52.6
AT1G70940.1	Thale cress	plasma membrane	55.76	52.19
KRH49577	Soybean	plasma membrane	48.25	51.98
TraesCS3A01G243700.1	Wheat	plasma membrane	30.72	51.54
PGSC0003DMT400078330	Potato	golgi, plasma membrane	56.09	51.38
VIT_01s0011g04860.t01	Wine grape	golgi, plasma membrane	55.59	51.31
Solyc05g008060.2.1	Tomato	nucleus	55.93	51.3
CDY41467	Canola	plasma membrane	49.92	51.2
Bra016366.1-P	Field mustard	golgi, plasma membrane	49.58	50.86
KRG89296	Soybean	plasma membrane	56.09	50.45
KRH50369	Soybean	plasma membrane	55.93	50.38
Bra003938.1-P	Field mustard	golgi, plasma membrane	45.24	49.63
CDY09501	Canola	plasma membrane	45.58	48.4
TraesCS7A01G492400.1	Wheat	golgi, plasma membrane, vacuole	50.92	48.26
Bra016173.1-P	Field mustard	plasma membrane	49.25	46.68
PGSC0003DMT400015267	Potato	cytosol	36.06	46.55
TraesCS5A01G284500.1	Wheat	extracellular, plasma membrane, vacuole	28.21	46.3
TraesCS7A01G258800.1	Wheat	plasma membrane, vacuole	26.88	43.87
TraesCS3A01G426700.1	Wheat	plasma membrane	27.05	42.97
TraesCS5A01G286000.1	Wheat	plasma membrane	24.04	40.34
TraesCS5A01G285700.1	Wheat	golgi, plasma membrane, vacuole	25.88	40.05
TraesCS3A01G331300.1	Wheat	plasma membrane	28.21	39.12
Bra026669.1-P	Field mustard	golgi, plasma membrane	51.92	39.02

Protein Annotations

EnsemblPlants:TraesCS1A01G415400.1	EnsemblPlantsGene:TraesCS1A01G415400	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	InterPro:Auxin_eff_plant	InterPro:Mem_trans	PANTHER:PTHR31752	PANTHER:PTHR31752:SF16
PFAM:PF03547	SEG:seg	TIGRFAMs:TIGR00946	TMHMM:TMhelix	MapMan:11.2.4.1.1	MapMan:24.2.5.2.1

Description

No Description!

Coordinates

chr1A:-:574358773..574361631

Molecular Weight (calculated)

63574.4 Da

IEP (calculated)

9.105

GRAVY (calculated)

0.356

Length

599 amino acids

Sequence
(BLAST)

001: MISWHDLYTV LTAMVPLYVA MILAYGSVRW WGVITADQCA GINRFVAVFA VPLLSFKVIS GSNLYAMDLR FAAADTLQKL LVLASLAVWS RLPVPFAGLD
101: WSITLFSSAT MPNTLIMGIP LLVAMYGRHA GDLMVQIVVL QCIIWCTLLL FLFEFRAARL LISGRFPAAA VADVRVDPDV VSLDGSHAEA QAEVAPDGSM
201: RVVVRRSAAS LSRRSLLNGA AAGMPSPARE SSVTGVEIFS VSSSRNHTPR GSSSFTHGDF SATTGGGGGA AAPALPPPPP PHGAVRASSF GAADLFSLHS
301: SRQHTPRPSA SYDEHAPRGR STAAVAPVED PKDNVHMFDW SSGASGASEV SGLPVLRSSA KESGRRRTPS DATSTNSDSS RLNRTGAAGV ERVISEAAAQ
401: ESLERLEAGT EATEKEQEQD ETKKVGDEVG KPPASVMLRL ILTMVWRRLI RNPNTYASVV GLVWSLIEFR YHVTMPAIVA KSISILSDAG LGMAMFSLGL
501: FMALQPKLIA CGKSAAASTM AVRFLLGPAV MAVSSAAVGL RGTLLRIAVV QATLPQGIVP FVFAKEYNLH AAILCTGVIF GMLIALPIVL LYYIILGLL

Best Arabidopsis Sequence Match ( AT1G23080.1 )
(BLAST)

001: MITWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS SNNPYAMNLR FIAADTLQKL IMLTLLIIWA NFTRSGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEYRGAKIL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAQIGDDG
201: KLHVTVRKSN ASRRSFYGGG GTNMTPRPSN LTGAEIYSLN TTPRGSNFNH SDFYSMMGFP GGRLSNFGPA DMYSVQSSRG PTPRPSNFEE SCAMASSPRF
301: GYYPGGAPGS YPAPNPEFST GNKTGSKAPK ENHHHVGKSN SNDAKELHMF VWGSNGSPVS DRAGLQVDNG ANEQVGKSDQ GGAKEIRMLI SDHTQNGENK
401: AGPMNGDYGG EEESERVKEV PNGLHKLRCN STAELNPKEA IETGETVPVK HMPPASVMTR LILIMVWRKL IRNPNTYSSL IGLIWALVAF RWDVAMPKII
501: QQSISILSDA GLGMAMFSLG LFMALQPKLI ACGNSTATFA MAVRFFTGPA VMAVAAMAIG LRGDLLRVAI VQAALPQGIV PFVFAKEYNV HPAILSTGVI
601: FGMLIALPIT LVYYILLGL

Arabidopsis Description

PIN7Auxin efflux carrier component 7 [Source:UniProtKB/Swiss-Prot;Acc:Q940Y5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.