Factsheet for Solyc04g007690.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g065380.2.1
Solyc11g018610.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23080.1	Solyc06g065380.2.1	AT1G35670.1	19130088
AT1G23080.1	Solyc11g018610.1.1	AT1G35670.1	19130088
AT1G23080.1	Solyc06g065380.2.1	AT4G09570.1	19130088
AT1G23080.1	Solyc11g018610.1.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g008060.2.1	Tomato	nucleus	86.3	81.01
CDY23471	Canola	golgi, plasma membrane	62.32	77.48
VIT_01s0011g04860.t01	Wine grape	golgi, plasma membrane	81.73	77.2
CDY25767	Canola	plasma membrane	71.78	76.79
CDX68327	Canola	plasma membrane	60.69	76.7
CDX96288	Canola	golgi, plasma membrane	72.92	76.67
CDY63826	Canola	plasma membrane	70.15	76.38
CDY68262	Canola	plasma membrane	72.76	76.37
CDY12491	Canola	plasma membrane	71.45	76.31
CDY40380	Canola	plasma membrane	69.66	75.98
Bra012358.1-P	Field mustard	golgi, plasma membrane	73.9	75.12
KRH38202	Soybean	plasma membrane	77.32	74.76
AT1G23080.1	Thale cress	plasma membrane	74.71	73.99
AT1G70940.1	Thale cress	plasma membrane	77.16	73.91
CDX91695	Canola	plasma membrane	67.7	72.68
KRH50369	Soybean	plasma membrane	78.79	72.63
KRH49577	Soybean	plasma membrane	65.74	72.48
KRG89296	Soybean	plasma membrane	78.47	72.22
AT2G01420.2	Thale cress	plasma membrane	71.94	71.59
CDY41467	Canola	plasma membrane	67.54	70.89
Bra016366.1-P	Field mustard	golgi, plasma membrane	67.54	70.89
Bra003938.1-P	Field mustard	golgi, plasma membrane	62.64	70.33
GSMUA_Achr8P29780_001	Banana	golgi, plasma membrane, vacuole	54.16	68.59
Solyc10g078370.1.1	Tomato	golgi, plasma membrane	64.76	66.83
GSMUA_Achr7P17140_001	Banana	plasma membrane	63.13	66.49
GSMUA_Achr1P25190_001	Banana	golgi, plasma membrane, vacuole	65.74	66.39
Solyc03g118740.2.1	Tomato	golgi, plasma membrane	66.07	66.28
CDY09501	Canola	plasma membrane	60.85	66.13
Solyc10g080880.1.1	Tomato	golgi, plasma membrane	62.64	65.53
Bra016173.1-P	Field mustard	plasma membrane	67.37	65.35
TraesCS3D01G221900.1	Wheat	plasma membrane	61.83	64.24
Os01t0643300-01	Rice	golgi, plasma membrane, vacuole	64.6	64.08
TraesCS3A01G231500.1	Wheat	plasma membrane	62.15	64.03
Zm00001d044083_P001	Maize	plasma membrane	60.85	61.15
Solyc07g006900.1.1	Tomato	plasma membrane	60.36	58.64
EES01159	Sorghum	golgi, plasma membrane	62.15	58.35
Solyc02g087660.2.1	Tomato	plasma membrane	33.12	56.86
TraesCS3B01G260700.1	Wheat	plasma membrane	56.28	56.65
Zm00001d045219_P001	Maize	plasma membrane	53.67	56.63
Os05t0576900-01	Rice	golgi, plasma membrane, vacuole	54.32	56.35
EER89254	Sorghum	golgi, plasma membrane, vacuole	54.49	55.67
TraesCS1D01G422900.1	Wheat	golgi, plasma membrane, vacuole	53.83	55.37
TraesCS1B01G445400.1	Wheat	golgi, plasma membrane, vacuole	53.51	54.94
TraesCS1A01G415400.1	Wheat	golgi, plasma membrane, vacuole	52.69	53.92
Bra026669.1-P	Field mustard	golgi, plasma membrane	69.82	53.7
Solyc06g059730.1.1	Tomato	plasma membrane	45.19	53.27
Solyc01g068410.2.1	Tomato	extracellular, plasma membrane	26.92	46.09
Solyc04g056620.1.1	Tomato	plasma membrane	24.96	44.09
HORVU7Hr1G038700.9	Barley	nucleus, plastid	23.82	21.01

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	EMBL:AB508933	InterPro:Auxin_eff_plant	UniProt:D6RT11	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005886	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009719
GO:GO:0009734	GO:GO:0009926	GO:GO:0009987	GO:GO:0010252	GO:GO:0010315	GO:GO:0010329
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:Mem_trans	PFAM:PF03547	PANTHER:PTHR31752
PANTHER:PTHR31752:SF36	EnsemblPlantsGene:Solyc04g007690.2	EnsemblPlants:Solyc04g007690.2.1	TIGRFAMs:TIGR00946	TMHMM:TMhelix	UniParc:UPI0001D8E5DA
SEG:seg	:	:	:	:	:

Description

Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:D6RT11]

Coordinates

chr4:-:1374090..1377203

Molecular Weight (calculated)

67616.1 Da

IEP (calculated)

7.259

GRAVY (calculated)

0.151

Length

613 amino acids

Sequence
(BLAST)

001: MISWHDLYVV LTAVVPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS MNNPYEMNFR FIAADTLQKV IMLIVLCIWS NVTKNGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGDYSG SLMVQVVVLQ CIIWYTLLLF LFEFRGAKML IMEQFPETAG EIVSFKVESD VVSLDGQDFL ETDAELGRDG
201: KLHVTLRKSN VSRRSFAMTP RPSNLTGAEI YSLNSSRNPT PRGSNFNHSD FYAMMGFPGR LSNFGPVDST PRPSNFEENC AQGSPKFGFY PAQSNYPAPN
301: PEIASIVSIN TKNQQVQYQH QHQQQQNGKA SHDAKELHMF VWSSSASPVS EAAGLHVFGG TDFSANEQSC RSDGAKEIRM LVPDHPQIGD NKDVSQDFGG
401: EEFSFGGSTG GGDEKSKDEK KEEKEGLTGV HTTTTGVQDS GTRKHMPPAS VMTRLILIMV WRKLIRNPNT YSSLIGLIWS LISYRWHVHM PKIIEKSISI
501: LSDAGLGMAM FSLGLFMALQ PKIIACGNTV ATFAMAVRFL TGPAVMAAAS IIVGLRGTLL HVAIVQAALP QGIVPFVFAK EYNVHPAILS TAVIFGMLIA
601: LPITLVYYII LGL

Best Arabidopsis Sequence Match ( AT1G70940.1 )
(BLAST)

001: MISWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS TNNPYAMNLR FIAADTLQKI IMLSLLVLWA NFTRSGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEFRGAKML IMEQFPETAA SIVSFKVESD VVSLDGHDFL ETDAEIGDDG
201: KLHVTVRKSN ASRRSFCGPN MTPRPSNLTG AEIYSLSTTP RGSNFNHSDF YNMMGFPGGR LSNFGPADMY SVQSSRGPTP RPSNFEENCA MASSPRFGYY
301: PGGGAGSYPA PNPEFSSTTT STANKSVNKN PKDVNTNQQT TLPTGGKSNS HDAKELHMFV WSSNGSPVSD RAGLNVFGGA PDNDQGGRSD QGAKEIRMLV
401: PDQSHNGETK AVAHPASGDF GGEQQFSFAG KEEEAERPKD AENGLNKLAP NSTAALQSKT GLGGAEASQR KNMPPASVMT RLILIMVWRK LIRNPNTYSS
501: LIGLIWALVA FRWHVAMPKI IQQSISILSD AGLGMAMFSL GLFMALQPKL IACGNSVATF AMAVRFLTGP AVMAVAAIAI GLRGDLLRVA IVQAALPQGI
601: VPFVFAKEYN VHPAILSTGV IFGMLIALPI TLVYYILLGL

Arabidopsis Description

PIN3Auxin efflux carrier component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Z8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.