Factsheet for GSMUA_Achr1P25190_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr6P25560_001
GSMUA_Achr9P08680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23080.1	GSMUA_Achr10P...	AT1G35670.1	19130088
AT1G23080.1	GSMUA_Achr2P08110_001	AT1G35670.1	19130088
AT1G23080.1	GSMUA_Achr6P25560_001	AT1G35670.1	19130088
AT1G23080.1	GSMUA_Achr9P08680_001	AT1G35670.1	19130088
AT1G23080.1	GSMUA_Achr10P...	AT4G09570.1	19130088
AT1G23080.1	GSMUA_Achr2P08110_001	AT4G09570.1	19130088
AT1G23080.1	GSMUA_Achr6P25560_001	AT4G09570.1	19130088
AT1G23080.1	GSMUA_Achr9P08680_001	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P17140_001	Banana	plasma membrane	80.72	84.19
GSMUA_Achr8P29780_001	Banana	golgi, plasma membrane, vacuole	60.79	76.24
Os01t0643300-01	Rice	golgi, plasma membrane, vacuole	77.1	75.73
TraesCS3D01G221900.1	Wheat	plasma membrane	71.83	73.9
TraesCS3A01G231500.1	Wheat	plasma membrane	72.16	73.61
HORVU3Hr1G057630.3	Barley	plasma membrane	70.84	71.91
Zm00001d044083_P001	Maize	plasma membrane	70.84	70.49
CDX68327	Canola	plasma membrane	54.86	68.66
CDY25767	Canola	plasma membrane	64.74	68.59
CDY68262	Canola	plasma membrane	65.73	68.32
GSMUA_Achr8P09440_001	Banana	plasma membrane	61.45	68.31
CDX96288	Canola	golgi, plasma membrane	65.57	68.27
CDY23471	Canola	golgi, plasma membrane	55.35	68.15
GSMUA_Achr7P07300_001	Banana	golgi, plasma membrane	63.76	68.01
CDY63826	Canola	plasma membrane	62.93	67.85
CDY40380	Canola	plasma membrane	62.77	67.79
CDY12491	Canola	plasma membrane	64.09	67.77
GSMUA_Achr8P23120_001	Banana	plasma membrane	56.18	67.66
GSMUA_Achr9P15520_001	Banana	plasma membrane	43.82	67.0
GSMUA_Achr2P00910_001	Banana	golgi, plasma membrane, vacuole	61.45	66.97
EES01159	Sorghum	golgi, plasma membrane	71.17	66.16
Solyc04g007690.2.1	Tomato	plasma membrane	66.39	65.74
KRH38202	Soybean	plasma membrane	68.2	65.3
Bra012358.1-P	Field mustard	golgi, plasma membrane	64.74	65.17
GSMUA_Achr3P07280_001	Banana	plasma membrane	62.27	64.62
GSMUA_Achr9P27160_001	Banana	plasma membrane	58.48	64.43
TraesCS3B01G260700.1	Wheat	plasma membrane	64.25	64.04
VIT_01s0011g04860.t01	Wine grape	golgi, plasma membrane	68.2	63.79
AT2G01420.2	Thale cress	plasma membrane	64.25	63.31
CDX91695	Canola	plasma membrane	59.47	63.22
AT1G23080.1	Thale cress	plasma membrane	64.42	63.17
Solyc05g008060.2.1	Tomato	nucleus	67.71	62.94
PGSC0003DMT400078330	Potato	golgi, plasma membrane	67.71	62.84
KRH49577	Soybean	plasma membrane	57.5	62.77
AT1G70940.1	Thale cress	plasma membrane	66.06	62.66
KRH50369	Soybean	plasma membrane	68.2	62.26
KRG89296	Soybean	plasma membrane	68.2	62.16
CDY41467	Canola	plasma membrane	59.31	61.64
GSMUA_Achr1P15720_001	Banana	plasma membrane	52.06	61.6
Bra016366.1-P	Field mustard	golgi, plasma membrane	59.14	61.47
Bra003938.1-P	Field mustard	golgi, plasma membrane	54.04	60.07
PGSC0003DMT400015267	Potato	cytosol	45.63	59.7
GSMUA_Achr4P00310_001	Banana	golgi, plasma membrane, vacuole	29.49	58.31
CDY09501	Canola	plasma membrane	53.38	57.45
Bra016173.1-P	Field mustard	plasma membrane	57.83	55.54
GSMUA_Achr3P22010_001	Banana	plasma membrane	44.32	53.06
GSMUA_Achr11P...	Banana	extracellular, plasma membrane, vacuole	28.01	52.96
GSMUA_Achr11P...	Banana	golgi, plasma membrane, vacuole	28.01	52.31
GSMUA_Achr5P25210_001	Banana	extracellular, golgi, vacuole	27.02	50.31
GSMUA_Achr5P25220_001	Banana	golgi, plasma membrane, vacuole	26.69	49.69
GSMUA_Achr8P08300_001	Banana	plasma membrane	46.79	49.65
GSMUA_AchrUn_...	Banana	golgi, plasma membrane, vacuole	29.82	49.59
Bra026669.1-P	Field mustard	golgi, plasma membrane	60.79	46.3
GSMUA_Achr5P25200_001	Banana	cytosol, extracellular, plasma membrane	9.23	35.67

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009719	GO:GO:0009734
GO:GO:0009921	GO:GO:0009926	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
EnsemblPlantsGene:GSMUA_Achr1G25190_001	EnsemblPlants:GSMUA_Achr1P25190_001	EnsemblPlants:GSMUA_Achr1T25190_001	UniProt:M0S2X6	InterPro:Mem_trans	PFAM:PF03547
PANTHER:PTHR31752	PANTHER:PTHR31752:SF37	TIGRFAMs:TIGR00946	TMHMM:TMhelix	UniParc:UPI0002969D71	SEG:seg

Description

Probable auxin efflux carrier component 3a [Source:GMGC_GENE;Acc:GSMUA_Achr1G25190_001]

Coordinates

chr1:-:19601187..19604059

Molecular Weight (calculated)

65129.7 Da

IEP (calculated)

8.436

GRAVY (calculated)

0.395

Length

607 amino acids

Sequence
(BLAST)

001: MISWHDLYTV LAAVVPLYVA MILAYGSVRW WGIFTPDQCS GINRFVAIFA VPLLSFHFIS TNDPYAMNLR FVAADTLQKL LVLGALAAWS NLLPHRRPLP
101: GGAAPLDWSI TVFSLSTLPN TLVMGIPLLI AMYGPYSGSL MVQIVVLQCI IWYTLMLFLF EFRAARLLIA DQFPDTAASI VSFRIDPDVV SLDAGATEAA
201: AEVSGDGKIH VTVRKSTSSR RSAMMTPRPS NLTGAEIYSL SSSRNPTPRG SNFNHAEFFA MVGGGAPAQT FRPSSFGAAD IYSLQSSRGP TPRAATATAT
301: GAAADAKELH MFVWSSSASP VSEVAGLHAF GGQDLSASDL GGRADHGAKE IRMLLPAELP LNGPTTKGLV TNILLFQTPI NTPGEDYRAE EFSFGDGRRG
401: ADDGREEKEV ITPEVLQKLE AKVVGGQGEE RPGGAVHHQM PPASVMTRLI LIMVWRKLIR NPNTYSSLIG LIWSLVAFRW HVAMPKIVEK SISILSDAGL
501: GMAMFSLGLF MALQPRIIAC GNTAAAFAMA VRFLTGPAVM AAASIAVGLR GTLLHVAIVQ AALPQGIVPF VFAKEYNVHP AILSTAVIFG MLIALPITLV
601: YYILLGL

Best Arabidopsis Sequence Match ( AT1G70940.1 )
(BLAST)

001: MISWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS TNNPYAMNLR FIAADTLQKI IMLSLLVLWA NFTRSGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEFRGAKML IMEQFPETAA SIVSFKVESD VVSLDGHDFL ETDAEIGDDG
201: KLHVTVRKSN ASRRSFCGPN MTPRPSNLTG AEIYSLSTTP RGSNFNHSDF YNMMGFPGGR LSNFGPADMY SVQSSRGPTP RPSNFEENCA MASSPRFGYY
301: PGGGAGSYPA PNPEFSSTTT STANKSVNKN PKDVNTNQQT TLPTGGKSNS HDAKELHMFV WSSNGSPVSD RAGLNVFGGA PDNDQGGRSD QGAKEIRMLV
401: PDQSHNGETK AVAHPASGDF GGEQQFSFAG KEEEAERPKD AENGLNKLAP NSTAALQSKT GLGGAEASQR KNMPPASVMT RLILIMVWRK LIRNPNTYSS
501: LIGLIWALVA FRWHVAMPKI IQQSISILSD AGLGMAMFSL GLFMALQPKL IACGNSVATF AMAVRFLTGP AVMAVAAIAI GLRGDLLRVA IVQAALPQGI
601: VPFVFAKEYN VHPAILSTGV IFGMLIALPI TLVYYILLGL

Arabidopsis Description

PIN3Auxin efflux carrier component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Z8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.