Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G231500.1 | Wheat | plasma membrane | 95.42 | 94.62 |
| HORVU3Hr1G057630.3 | Barley | plasma membrane | 91.86 | 90.64 |
| TraesCS3B01G260700.1 | Wheat | plasma membrane | 87.29 | 84.56 |
| Os01t0643300-01 | Rice | golgi, plasma membrane, vacuole | 82.71 | 78.96 |
| Zm00001d044083_P001 | Maize | plasma membrane | 75.93 | 73.44 |
| GSMUA_Achr1P25190_001 | Banana | golgi, plasma membrane, vacuole | 73.9 | 71.83 |
| EES01159 | Sorghum | golgi, plasma membrane | 76.61 | 69.22 |
| CDY25767 | Canola | plasma membrane | 64.58 | 66.49 |
| CDY63826 | Canola | plasma membrane | 62.54 | 65.54 |
| CDX96288 | Canola | golgi, plasma membrane | 64.75 | 65.52 |
| CDY23471 | Canola | golgi, plasma membrane | 54.75 | 65.52 |
| CDY40380 | Canola | plasma membrane | 62.37 | 65.48 |
| CDY68262 | Canola | plasma membrane | 64.75 | 65.41 |
| CDX68327 | Canola | plasma membrane | 53.73 | 65.36 |
| CDY12491 | Canola | plasma membrane | 63.56 | 65.33 |
| TraesCS6D01G287800.1 | Wheat | plasma membrane | 64.24 | 64.35 |
| TraesCS4D01G125300.1 | Wheat | plasma membrane | 61.36 | 63.96 |
| Bra012358.1-P | Field mustard | golgi, plasma membrane | 64.58 | 63.18 |
| TraesCS7D01G191600.1 | Wheat | plasma membrane | 62.37 | 62.8 |
| KRH38202 | Soybean | plasma membrane | 66.95 | 62.3 |
| Solyc04g007690.2.1 | Tomato | plasma membrane | 64.24 | 61.83 |
| CDX91695 | Canola | plasma membrane | 58.64 | 60.6 |
| AT1G23080.1 | Thale cress | plasma membrane | 63.39 | 60.42 |
| AT2G01420.2 | Thale cress | plasma membrane | 63.05 | 60.39 |
| AT1G70940.1 | Thale cress | plasma membrane | 65.25 | 60.16 |
| VIT_01s0011g04860.t01 | Wine grape | golgi, plasma membrane | 66.1 | 60.09 |
| KRH50369 | Soybean | plasma membrane | 67.63 | 60.0 |
| Solyc05g008060.2.1 | Tomato | nucleus | 66.27 | 59.88 |
| PGSC0003DMT400078330 | Potato | golgi, plasma membrane | 66.27 | 59.79 |
| KRG89296 | Soybean | plasma membrane | 67.46 | 59.76 |
| CDY41467 | Canola | plasma membrane | 58.98 | 59.59 |
| Bra016366.1-P | Field mustard | golgi, plasma membrane | 58.98 | 59.59 |
| KRH49577 | Soybean | plasma membrane | 56.1 | 59.53 |
| TraesCS1D01G422900.1 | Wheat | golgi, plasma membrane, vacuole | 59.83 | 59.23 |
| Bra003938.1-P | Field mustard | golgi, plasma membrane | 53.22 | 57.51 |
| TraesCS3D01G247700.1 | Wheat | plasma membrane | 34.24 | 56.58 |
| CDY09501 | Canola | plasma membrane | 53.9 | 56.38 |
| PGSC0003DMT400015267 | Potato | cytosol | 43.39 | 55.17 |
| TraesCS7D01G478800.1 | Wheat | golgi, plasma membrane, vacuole | 59.15 | 55.13 |
| Bra016173.1-P | Field mustard | plasma membrane | 57.29 | 53.48 |
| TraesCS5D01G291800.1 | Wheat | extracellular, plasma membrane, vacuole | 30.68 | 49.32 |
| TraesCS3D01G421600.1 | Wheat | plasma membrane | 29.66 | 46.3 |
| Bra026669.1-P | Field mustard | golgi, plasma membrane | 60.85 | 45.04 |
| TraesCS7D01G259700.1 | Wheat | plasma membrane, vacuole | 28.98 | 45.0 |
| TraesCS5D01G293300.1 | Wheat | plasma membrane | 27.46 | 42.97 |
| TraesCS5D01G293000.1 | Wheat | golgi, plasma membrane, vacuole | 26.44 | 41.38 |
| TraesCS5D01G293100.1 | Wheat | golgi, plasma membrane, vacuole | 26.61 | 40.57 |
| TraesCS3D01G324800.1 | Wheat | plasma membrane | 28.47 | 38.98 |
| TraesCS7D01G446900.1 | Wheat | plasma membrane | 18.31 | 37.89 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G221900.1 | EnsemblPlantsGene:TraesCS3D01G221900 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0009921 | GO:GO:0009926 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 |
| InterPro:Auxin_eff_plant | InterPro:Mem_trans | PANTHER:PTHR31752 | PANTHER:PTHR31752:SF37 | PFAM:PF03547 | SEG:seg |
| TIGRFAMs:TIGR00946 | TMHMM:TMhelix | MapMan:11.2.4.1.1 | MapMan:24.2.5.2.1 | : | : |
Description
No Description!
Coordinates
chr3D:-:302847256..302850179
Molecular Weight (calculated)
62694.9 Da
IEP (calculated)
6.923
GRAVY (calculated)
0.321
Length
590 amino acids
Sequence
(BLAST)
(BLAST)
001: MISLHDLYTV LAAVVPLYVA MILAYGSVRW WGIFTPDQCS GINRFVAIFA VPLLSFHFIS TNDPYEMNLR FLAADTLQKL LVLALLAACS RLIPSRLDWS
101: ITLFSLSTLP NTLVMGIPLL MAMYGPYAGS LMVQIVVLQC IIWYTLLLFL FEFRAARLLI ADQFPDTAAS IVSLHVDPDV VSLEGGRAET ESEVAADGRL
201: HVTVRRSSVS RRSTLLATPR PSNLTGAEIY SLSSSQNPTP RGSNFNQADF FAVVGGAPPA RVGGSSFGAS EHYSLQSSQG PTPRESNLDE HSAGPKHATT
301: DAGAQHNHDA KELHMFVWSS SSSPVSEAVS GLPMFTGGAG AAHLDAAAKE IRMVVPADPP QNGSCKENGG YTAAARGGGK AVEDDGDAAV QAGPDRLAAK
401: LNSSPGDEDG AESGRARQHQ MPPASVMTRL ILIMVWRKLV RNPNTYSSLI GLTWSLVAFR WHVSMPTMVE KSISILSDAG LGMAMFSLGL FMALQPSIIA
501: CGNSAAVASM AVRFLAGPAV TAAASAAVGL RGTLLKVAIV QAALPQGIVP FVFAKEYNVH PDILSTAVIF GMLIALPITL AYYALLGLVH
101: ITLFSLSTLP NTLVMGIPLL MAMYGPYAGS LMVQIVVLQC IIWYTLLLFL FEFRAARLLI ADQFPDTAAS IVSLHVDPDV VSLEGGRAET ESEVAADGRL
201: HVTVRRSSVS RRSTLLATPR PSNLTGAEIY SLSSSQNPTP RGSNFNQADF FAVVGGAPPA RVGGSSFGAS EHYSLQSSQG PTPRESNLDE HSAGPKHATT
301: DAGAQHNHDA KELHMFVWSS SSSPVSEAVS GLPMFTGGAG AAHLDAAAKE IRMVVPADPP QNGSCKENGG YTAAARGGGK AVEDDGDAAV QAGPDRLAAK
401: LNSSPGDEDG AESGRARQHQ MPPASVMTRL ILIMVWRKLV RNPNTYSSLI GLTWSLVAFR WHVSMPTMVE KSISILSDAG LGMAMFSLGL FMALQPSIIA
501: CGNSAAVASM AVRFLAGPAV TAAASAAVGL RGTLLKVAIV QAALPQGIVP FVFAKEYNVH PDILSTAVIF GMLIALPITL AYYALLGLVH
001: MITWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS SNNPYAMNLR FIAADTLQKL IMLTLLIIWA NFTRSGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEYRGAKIL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAQIGDDG
201: KLHVTVRKSN ASRRSFYGGG GTNMTPRPSN LTGAEIYSLN TTPRGSNFNH SDFYSMMGFP GGRLSNFGPA DMYSVQSSRG PTPRPSNFEE SCAMASSPRF
301: GYYPGGAPGS YPAPNPEFST GNKTGSKAPK ENHHHVGKSN SNDAKELHMF VWGSNGSPVS DRAGLQVDNG ANEQVGKSDQ GGAKEIRMLI SDHTQNGENK
401: AGPMNGDYGG EEESERVKEV PNGLHKLRCN STAELNPKEA IETGETVPVK HMPPASVMTR LILIMVWRKL IRNPNTYSSL IGLIWALVAF RWDVAMPKII
501: QQSISILSDA GLGMAMFSLG LFMALQPKLI ACGNSTATFA MAVRFFTGPA VMAVAAMAIG LRGDLLRVAI VQAALPQGIV PFVFAKEYNV HPAILSTGVI
601: FGMLIALPIT LVYYILLGL
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEYRGAKIL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAQIGDDG
201: KLHVTVRKSN ASRRSFYGGG GTNMTPRPSN LTGAEIYSLN TTPRGSNFNH SDFYSMMGFP GGRLSNFGPA DMYSVQSSRG PTPRPSNFEE SCAMASSPRF
301: GYYPGGAPGS YPAPNPEFST GNKTGSKAPK ENHHHVGKSN SNDAKELHMF VWGSNGSPVS DRAGLQVDNG ANEQVGKSDQ GGAKEIRMLI SDHTQNGENK
401: AGPMNGDYGG EEESERVKEV PNGLHKLRCN STAELNPKEA IETGETVPVK HMPPASVMTR LILIMVWRKL IRNPNTYSSL IGLIWALVAF RWDVAMPKII
501: QQSISILSDA GLGMAMFSLG LFMALQPKLI ACGNSTATFA MAVRFFTGPA VMAVAAMAIG LRGDLLRVAI VQAALPQGIV PFVFAKEYNV HPAILSTGVI
601: FGMLIALPIT LVYYILLGL
Arabidopsis Description
PIN7Auxin efflux carrier component 7 [Source:UniProtKB/Swiss-Prot;Acc:Q940Y5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.