Factsheet for TraesCS5D01G293300.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 5
golgi 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G286000.1	Wheat	plasma membrane	91.51	96.64
HORVU5Hr1G076210.1	Barley	plasma membrane	87.0	88.89
TraesCS5D01G293100.1	Wheat	golgi, plasma membrane, vacuole	74.8	72.87
TraesCS5D01G293000.1	Wheat	golgi, plasma membrane, vacuole	72.68	72.68
TraesCS5D01G291800.1	Wheat	extracellular, plasma membrane, vacuole	61.54	63.22
PGSC0003DMT400017300	Potato	plasma membrane	14.32	54.55
TraesCS7D01G259700.1	Wheat	plasma membrane, vacuole	53.85	53.42
Solyc01g068410.2.1	Tomato	extracellular, plasma membrane	45.09	47.49
TraesCS3D01G421600.1	Wheat	plasma membrane	47.48	47.35
PGSC0003DMT400046253	Potato	plasma membrane	44.56	47.32
VIT_04s0023g00450.t01	Wine grape	golgi, plasma membrane	40.58	42.38
PGSC0003DMT400017301	Potato	golgi, plasma membrane	18.83	40.11
TraesCS3D01G247700.1	Wheat	plasma membrane	36.34	38.38
Solyc04g056620.1.1	Tomato	plasma membrane	35.28	38.33
PGSC0003DMT400027309	Potato	extracellular, plasma membrane, vacuole	31.83	37.38
TraesCS3D01G324800.1	Wheat	plasma membrane	34.22	29.93
TraesCS4D01G125300.1	Wheat	plasma membrane	42.71	28.45
TraesCS3D01G221900.1	Wheat	plasma membrane	42.97	27.46
TraesCS7D01G191600.1	Wheat	plasma membrane	41.38	26.62
TraesCS7D01G446900.1	Wheat	plasma membrane	19.89	26.32
TraesCS6D01G287800.1	Wheat	plasma membrane	40.58	25.98
TraesCS1D01G422900.1	Wheat	golgi, plasma membrane, vacuole	40.32	25.5
TraesCS7D01G478800.1	Wheat	golgi, plasma membrane, vacuole	42.71	25.43

Protein Annotations

EnsemblPlants:TraesCS5D01G293300.1	EnsemblPlantsGene:TraesCS5D01G293300	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	InterPro:Auxin_eff_plant	InterPro:Mem_trans	PANTHER:PTHR31752	PANTHER:PTHR31752:SF15
PFAM:PF03547	SEG:seg	TIGRFAMs:TIGR00946	TMHMM:TMhelix	MapMan:11.2.4.1.1	MapMan:24.2.5.2.1

Description

No Description!

Coordinates

chr5D:+:390504143..390506578

Molecular Weight (calculated)

40035.3 Da

IEP (calculated)

9.500

GRAVY (calculated)

0.641

Length

377 amino acids

Sequence
(BLAST)

001: MIGWGDVYRV AAAMAPLYFA LGLGYGSVRW WKLFTPDHCD AVNRLVVYFA FPLFGFDFTA RAGSFAAGYR VLAADAVAKL IVVLALAGCA AARRAKAATR
101: RGGGGAPSSY SWCITGFSLA ALNNGLLVGV SLLDAMYGKW ARDVIVQLSV LQSVVWLPLM LVVFEARQAW LEVTPEPADQ GAREEGDQEA PGSDVHRPAA
201: SRDGRKTAAT GCAFWAPLLR AVGVKLARNP NVYASLLGVA WSSVANRWHL KMPSIIDGSI AIMSKTCIGM GMFSMGMFIG LQDKFIVCGL GLTVLSLGLR
301: FIVAPAATVA GALILGLRGD LLRVTILQAA LPQSVATFVF SREYDLHAGV LSTAVIVSTL ASLPVLTAYY LVLGLVI

Best Arabidopsis Sequence Match ( AT5G15100.1 )
(BLAST)

001: MISWLDIYHV VSATVPLYVS MTLGFLSARH LKLFSPEQCA GINKFVAKFS IPLLSFQIIS ENNPFKMSPK LILSDILQKF LVVVVLAMVL RFWHPTGGRG
101: GKLGWVITGL SISVLPNTLI LGMPILSAIY GDEAASILEQ IVVLQSLIWY TILLFLFELN AARALPSSGA SLEHTGNDQE EANIEDEPKE EEDEEEVAIV
201: RTRSVGTMKI LLKAWRKLII NPNTYATLIG IIWATLHFRL GWNLPEMIDK SIHLLSDGGL GMAMFSLGLF MASQSSIIAC GTKMAIITML LKFVLGPALM
301: IASAYCIRLK STLFKVAILQ AALPQGVVPF VFAKEYNLHP EIISTGVIFG MLIALPTTLA YYFLLDL

Arabidopsis Description

PIN8Auxin efflux carrier component 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFP6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.