Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 7
- golgi 6
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400046253 | Potato | plasma membrane | 97.18 | 48.45 |
| Solyc01g068410.2.1 | Tomato | extracellular, plasma membrane | 92.66 | 45.81 |
| PGSC0003DMT400027309 | Potato | extracellular, plasma membrane, vacuole | 51.41 | 28.35 |
| HORVU5Hr1G076120.2 | Barley | golgi, plasma membrane, vacuole | 42.94 | 28.15 |
| OQU80833 | Sorghum | extracellular | 46.89 | 27.76 |
| PGSC0003DMT400003569 | Potato | plasma membrane | 38.98 | 26.54 |
| TraesCS5D01G291800.1 | Wheat | extracellular, plasma membrane, vacuole | 49.72 | 23.98 |
| TraesCS5B01G283500.1 | Wheat | extracellular, plasma membrane, vacuole | 49.72 | 23.91 |
| TraesCS5A01G284500.1 | Wheat | extracellular, plasma membrane, vacuole | 49.15 | 23.84 |
| TraesCS5B01G283600.1 | Wheat | plasma membrane | 47.46 | 23.08 |
| KXG35972 | Sorghum | extracellular, plasma membrane, vacuole | 48.02 | 22.91 |
| Zm00001d006082_P001 | Maize | extracellular, plasma membrane, vacuole | 46.89 | 22.74 |
| TraesCS7A01G258800.1 | Wheat | plasma membrane, vacuole | 46.89 | 22.62 |
| VIT_04s0023g00450.t01 | Wine grape | golgi, plasma membrane | 45.2 | 22.16 |
| Os08t0529000-01 | Rice | plasma membrane | 45.76 | 21.89 |
| TraesCS7D01G259700.1 | Wheat | plasma membrane, vacuole | 45.76 | 21.32 |
| TraesCS5D01G293000.1 | Wheat | golgi, plasma membrane, vacuole | 44.07 | 20.69 |
| TraesCS5A01G286000.1 | Wheat | plasma membrane | 41.24 | 20.45 |
| TraesCS5B01G284900.1 | Wheat | golgi, plasma membrane, vacuole | 43.5 | 20.42 |
| TraesCS5B01G285000.1 | Wheat | plasma membrane | 44.07 | 20.16 |
| TraesCS5D01G293100.1 | Wheat | golgi, plasma membrane, vacuole | 44.07 | 20.16 |
| TraesCS5A01G285700.1 | Wheat | golgi, plasma membrane, vacuole | 43.5 | 19.9 |
| HORVU5Hr1G076210.1 | Barley | plasma membrane | 39.55 | 18.97 |
| TraesCS5D01G293300.1 | Wheat | plasma membrane | 40.11 | 18.83 |
| Zm00001d031594_P001 | Maize | plasma membrane | 44.63 | 18.08 |
| PGSC0003DMT400079013 | Potato | plasma membrane | 40.68 | 13.64 |
| PGSC0003DMT400072459 | Potato | golgi, plasma membrane | 43.5 | 13.12 |
| PGSC0003DMT400021600 | Potato | golgi, plasma membrane | 43.5 | 12.96 |
| PGSC0003DMT400014752 | Potato | golgi, plasma membrane | 44.63 | 12.87 |
| PGSC0003DMT400078330 | Potato | golgi, plasma membrane | 45.2 | 12.23 |
| PGSC0003DMT400048251 | Potato | plasma membrane | 43.5 | 12.2 |
| HORVU5Hr1G076060.2 | Barley | mitochondrion | 12.43 | 6.04 |
| Os09t0505400-00 | Rice | mitochondrion, nucleus, peroxisome | 9.04 | 3.86 |
| PGSC0003DMT400017300 | Potato | plasma membrane | 0.56 | 1.01 |
| PGSC0003DMT400015267 | Potato | cytosol | 0.56 | 0.22 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400017301 | EnsemblPlantsGene:PGSC0003DMG400006744 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0055085 | InterPro:Mem_trans | PANTHER:PTHR31752 | PANTHER:PTHR31752:SF2 | PFAM:PF03547 |
| PGSC:PGSC0003DMG400006744 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000295860E | UniProt:M1A8T3 | MapMan:11.2.4.1.1 |
| MapMan:24.2.5.2.1 | : | : | : | : | : |
Description
Auxin efflux carrier component [Source:PGSC_GENE;Acc:PGSC0003DMG400006744]
Coordinates
chr00:+:35779293..35780018
Molecular Weight (calculated)
20258.2 Da
IEP (calculated)
9.083
GRAVY (calculated)
0.642
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MIGWDDIYKV VVGMMPLYVA LILGYGSVKW WHMFKPEQCD TINRFNCFFI LPFFNFQFIA NINPYNLNYL FLTGDVIAKA LVILILVLWA NFYRKGCFVW
101: GITTFSLSTL NNTLVVGVPL MKAMYGDLGV DLVVQAAVIQ ALLWLTSLLF ALEFWKTKMN NNINGIANNN SVRIGKY
101: GITTFSLSTL NNTLVVGVPL MKAMYGDLGV DLVVQAAVIQ ALLWLTSLLF ALEFWKTKMN NNINGIANNN SVRIGKY
001: MINCGDVYKV IEAMVPLYVA LILGYGSVKW WHIFTRDQCD AINRLVCYFT LPLFTIEFTA HVDPFNMNYR FIAADVLSKV IIVTVLALWA KYSNKGSYCW
101: SITSFSLCTL TNSLVVGVPL AKAMYGQQAV DLVVQSSVFQ AIVWLTLLLF VLEFRKAGFS SNNISDVQVD NINIESGKRE TVVVGEKSFL EVMSLVWLKL
201: ATNPNCYSCI LGIAWAFISN RWHLELPGIL EGSILIMSKA GTGTAMFNMG IFMALQEKLI VCGTSLTVMG MVLKFIAGPA AMAIGSIVLG LHGDVLRVAI
301: IQAALPQSIT SFIFAKEYGL HADVLSTA
101: SITSFSLCTL TNSLVVGVPL AKAMYGQQAV DLVVQSSVFQ AIVWLTLLLF VLEFRKAGFS SNNISDVQVD NINIESGKRE TVVVGEKSFL EVMSLVWLKL
201: ATNPNCYSCI LGIAWAFISN RWHLELPGIL EGSILIMSKA GTGTAMFNMG IFMALQEKLI VCGTSLTVMG MVLKFIAGPA AMAIGSIVLG LHGDVLRVAI
301: IQAALPQSIT SFIFAKEYGL HADVLSTA
Arabidopsis Description
PIN5Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178UIR3]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.