Factsheet for PGSC0003DMT400046253

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017300	Potato	plasma membrane	27.61	98.99
PGSC0003DMT400017301	Potato	golgi, plasma membrane	48.45	97.18
Solyc01g068410.2.1	Tomato	extracellular, plasma membrane	94.37	93.58
TraesCS5A01G284500.1	Wheat	extracellular, plasma membrane, vacuole	55.21	53.7
TraesCS5D01G291800.1	Wheat	extracellular, plasma membrane, vacuole	55.49	53.68
TraesCS5B01G283500.1	Wheat	extracellular, plasma membrane, vacuole	55.49	53.53
KXG35972	Sorghum	extracellular, plasma membrane, vacuole	54.37	52.02
TraesCS5B01G283600.1	Wheat	plasma membrane	52.68	51.37
VIT_04s0023g00450.t01	Wine grape	golgi, plasma membrane	51.55	50.69
Zm00001d006082_P001	Maize	extracellular, plasma membrane, vacuole	52.11	50.68
PGSC0003DMT400027309	Potato	extracellular, plasma membrane, vacuole	45.35	50.16
Os08t0529000-01	Rice	plasma membrane	50.7	48.65
TraesCS7A01G258800.1	Wheat	plasma membrane, vacuole	50.14	48.5
TraesCS7D01G259700.1	Wheat	plasma membrane, vacuole	49.58	46.32
HORVU5Hr1G076210.1	Barley	plasma membrane	47.04	45.26
TraesCS5D01G293300.1	Wheat	plasma membrane	47.32	44.56
TraesCS5D01G293000.1	Wheat	golgi, plasma membrane, vacuole	47.04	44.3
TraesCS5B01G284900.1	Wheat	golgi, plasma membrane, vacuole	47.04	44.3
TraesCS5A01G286000.1	Wheat	plasma membrane	44.51	44.26
TraesCS5B01G285000.1	Wheat	plasma membrane	47.61	43.67
TraesCS5A01G285700.1	Wheat	golgi, plasma membrane, vacuole	47.04	43.15
TraesCS5D01G293100.1	Wheat	golgi, plasma membrane, vacuole	47.04	43.15
PGSC0003DMT400003569	Potato	plasma membrane	30.42	41.54
Zm00001d031594_P001	Maize	plasma membrane	48.17	39.13
OQU80833	Sorghum	extracellular	30.99	36.79
HORVU5Hr1G076120.2	Barley	golgi, plasma membrane, vacuole	25.63	33.7
PGSC0003DMT400079013	Potato	plasma membrane	42.54	28.6
PGSC0003DMT400072459	Potato	golgi, plasma membrane	45.63	27.6
PGSC0003DMT400021600	Potato	golgi, plasma membrane	45.35	27.1
PGSC0003DMT400014752	Potato	golgi, plasma membrane	46.2	26.71
PGSC0003DMT400078330	Potato	golgi, plasma membrane	47.32	25.69
PGSC0003DMT400048251	Potato	plasma membrane	45.63	25.67
HORVU5Hr1G076060.2	Barley	mitochondrion	25.07	24.45
Os09t0505400-00	Rice	mitochondrion, nucleus, peroxisome	26.2	22.46
PGSC0003DMT400015267	Potato	cytosol	24.79	18.97

Protein Annotations

EntrezGene:102585800	MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	GO:GO:0005575	GO:GO:0006810
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	UniProt:M1BIV1	InterPro:Mem_trans	PFAM:PF03547
EnsemblPlantsGene:PGSC0003DMG400017955	PGSC:PGSC0003DMG400017955	EnsemblPlants:PGSC0003DMT400046253	PANTHER:PTHR31752	PANTHER:PTHR31752:SF2	TIGRFAMs:TIGR00946
TMHMM:TMhelix	UniParc:UPI0002950C5F	RefSeq:XP_006345358.1	SEG:seg	:	:

Description

Auxin efflux carrier component [Source:PGSC_GENE;Acc:PGSC0003DMG400017955]

Coordinates

chr1:-:64013812..64017172

Molecular Weight (calculated)

39267.1 Da

IEP (calculated)

9.245

GRAVY (calculated)

0.762

Length

355 amino acids

Sequence
(BLAST)

001: MIGWDDIYKV VVGMMPLYVA LILGYGSVKW WHMFKPEQCD TINRFNCFFI LPFFNFQFIA NINPYNLNYL FLTGDVIAKA LVILILVLWA NFYRKGSFSW
101: GITTFSLSTL NNTLVVGVPL MKAMYGDLGV DLVVQAAVIQ ALLWLTSLLF ALEFWKTKMN NNINGIANNN SVELGNINTT TQMRNINNAE LAFWPLMKAV
201: STKLAKNPNS YACFLGLFWA LVASRWHFRM PSIIEGSILI MSKAGSGVAM FSMGLFMALQ GKIIACGAAL TIYAMILRFV VGPATMALGC VVLGLRGNVL
301: RIAIIQAALP QAVTSFVYAQ EYGLHADVLS TAVIVGTIIS LPLLIAYYAI LDIMP

Best Arabidopsis Sequence Match ( AT5G16530.1 )
(BLAST)

001: MINCGDVYKV IEAMVPLYVA LILGYGSVKW WHIFTRDQCD AINRLVCYFT LPLFTIEFTA HVDPFNMNYR FIAADVLSKV IIVTVLALWA KYSNKGSYCW
101: SITSFSLCTL TNSLVVGVPL AKAMYGQQAV DLVVQSSVFQ AIVWLTLLLF VLEFRKAGFS SNNISDVQVD NINIESGKRE TVVVGEKSFL EVMSLVWLKL
201: ATNPNCYSCI LGIAWAFISN RWHLELPGIL EGSILIMSKA GTGTAMFNMG IFMALQEKLI VCGTSLTVMG MVLKFIAGPA AMAIGSIVLG LHGDVLRVAI
301: IQAALPQSIT SFIFAKEYGL HADVLSTAVI FGMLVSLPVL VAYYAALEFI H

Arabidopsis Description

PIN5Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178UIR3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.