Factsheet for Solyc01g068410.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

nucleus 1
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046253	Potato	plasma membrane	93.58	94.37
PGSC0003DMT400017300	Potato	plasma membrane	25.7	92.93
PGSC0003DMT400017301	Potato	golgi, plasma membrane	45.81	92.66
TraesCS5A01G284500.1	Wheat	extracellular, plasma membrane, vacuole	53.63	52.6
TraesCS5D01G291800.1	Wheat	extracellular, plasma membrane, vacuole	53.91	52.59
TraesCS5B01G283500.1	Wheat	extracellular, plasma membrane, vacuole	53.91	52.45
KXG35972	Sorghum	extracellular, plasma membrane, vacuole	53.35	51.48
Solyc04g056620.1.1	Tomato	plasma membrane	49.72	51.3
TraesCS5B01G283600.1	Wheat	plasma membrane	51.96	51.1
Zm00001d006082_P001	Maize	extracellular, plasma membrane, vacuole	51.96	50.96
VIT_04s0023g00450.t01	Wine grape	golgi, plasma membrane	50.56	50.14
Os08t0529000-01	Rice	plasma membrane	49.72	48.11
TraesCS7A01G258800.1	Wheat	plasma membrane, vacuole	49.16	47.96
HORVU5Hr1G076210.1	Barley	plasma membrane	47.21	45.8
TraesCS7D01G259700.1	Wheat	plasma membrane, vacuole	48.6	45.79
TraesCS5D01G293300.1	Wheat	plasma membrane	47.49	45.09
TraesCS5A01G286000.1	Wheat	plasma membrane	44.41	44.54
TraesCS5D01G293000.1	Wheat	golgi, plasma membrane, vacuole	46.65	44.3
TraesCS5B01G284900.1	Wheat	golgi, plasma membrane, vacuole	46.65	44.3
TraesCS5B01G285000.1	Wheat	plasma membrane	46.93	43.41
TraesCS5A01G285700.1	Wheat	golgi, plasma membrane, vacuole	46.37	42.89
TraesCS5D01G293100.1	Wheat	golgi, plasma membrane, vacuole	46.37	42.89
Solyc02g087660.2.1	Tomato	plasma membrane	39.11	39.22
Zm00001d031594_P001	Maize	plasma membrane	47.21	38.67
OQU80833	Sorghum	extracellular	29.89	35.79
HORVU5Hr1G076120.2	Barley	golgi, plasma membrane, vacuole	24.58	32.59
Solyc06g059730.1.1	Tomato	plasma membrane	41.34	28.46
Solyc10g080880.1.1	Tomato	golgi, plasma membrane	44.69	27.3
Solyc10g078370.1.1	Tomato	golgi, plasma membrane	44.97	27.1
Solyc04g007690.2.1	Tomato	plasma membrane	46.09	26.92
Solyc03g118740.2.1	Tomato	golgi, plasma membrane	45.81	26.84
Solyc07g006900.1.1	Tomato	plasma membrane	45.25	25.67
Solyc05g008060.2.1	Tomato	nucleus	46.37	25.42
HORVU5Hr1G076060.2	Barley	mitochondrion	24.02	23.63
Os09t0505400-00	Rice	mitochondrion, nucleus, peroxisome	25.7	22.22

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	UniProt:E5KGD6	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005886
GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009719	GO:GO:0009734
GO:GO:0009926	GO:GO:0009987	GO:GO:0010252	GO:GO:0010315	GO:GO:0010329	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	EMBL:HQ127080	InterPro:Mem_trans	PFAM:PF03547	PANTHER:PTHR31752
PANTHER:PTHR31752:SF2	EnsemblPlantsGene:Solyc01g068410.2	EnsemblPlants:Solyc01g068410.2.1	TIGRFAMs:TIGR00946	TMHMM:TMhelix	UniParc:UPI0001F3EF94
SEG:seg	:	:	:	:	:

Description

Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:E5KGD6]

Coordinates

chr1:+:77668365..77671367

Molecular Weight (calculated)

39675.5 Da

IEP (calculated)

8.731

GRAVY (calculated)

0.732

Length

358 amino acids

Sequence
(BLAST)

001: MIGWDDIYKV VVGMMPLYVA LILGYGSVKW WHMFKPEQCD TINRFNCFFI LPFFNFQFIA KINPYNLNYL FLSGDVIAKA LVILILVLWA NFYKKGSFCW
101: GITTFSLSTL NNTLVVGVPL MKAMYGDLGV DLVVQAAVIQ ALLWLTSLLF ALEFWKTKMT NNSNLIDDNN NNSLELGNIS STNTQMRNIN NIELAFWPLM
201: KAVSTKLAKN PNSYACFLGL FWALVASRWH FEMPSIIEGS ILIMSKAGSG VSMFSMGLFM ALRGKIIACG AALTIYSMIL RFIVGPATMA LGCVVLGLRG
301: NVLRVAIIQA ALPQAVTSFV YAQEYGLHAD VLSTAVIVGT IISLPLLIAY YAVLDIIP

Best Arabidopsis Sequence Match ( AT5G16530.1 )
(BLAST)

001: MINCGDVYKV IEAMVPLYVA LILGYGSVKW WHIFTRDQCD AINRLVCYFT LPLFTIEFTA HVDPFNMNYR FIAADVLSKV IIVTVLALWA KYSNKGSYCW
101: SITSFSLCTL TNSLVVGVPL AKAMYGQQAV DLVVQSSVFQ AIVWLTLLLF VLEFRKAGFS SNNISDVQVD NINIESGKRE TVVVGEKSFL EVMSLVWLKL
201: ATNPNCYSCI LGIAWAFISN RWHLELPGIL EGSILIMSKA GTGTAMFNMG IFMALQEKLI VCGTSLTVMG MVLKFIAGPA AMAIGSIVLG LHGDVLRVAI
301: IQAALPQSIT SFIFAKEYGL HADVLSTAVI FGMLVSLPVL VAYYAALEFI H

Arabidopsis Description

PIN5Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178UIR3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.