Factsheet for Solyc06g059730.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079013	Potato	plasma membrane	95.96	94.51
VIT_18s0001g15420.t01	Wine grape	plasma membrane	82.69	78.18
KRH18110	Soybean	extracellular	16.73	69.05
KRH15941	Soybean	plasma membrane	69.62	68.17
KRH18109	Soybean	plasma membrane	45.38	67.43
AT1G77110.1	Thale cress	plasma membrane	71.35	65.09
CDX87543	Canola	plasma membrane	69.81	64.02
CDX88341	Canola	plasma membrane	69.81	64.02
Bra015694.1-P	Field mustard	plasma membrane	69.81	63.24
GSMUA_Achr8P08300_001	Banana	plasma membrane	69.42	63.11
GSMUA_Achr3P22010_001	Banana	plasma membrane	60.19	61.74
Solyc10g080880.1.1	Tomato	golgi, plasma membrane	55.77	49.49
Solyc10g078370.1.1	Tomato	golgi, plasma membrane	55.19	48.32
Solyc02g087660.2.1	Tomato	plasma membrane	32.5	47.34
Solyc03g118740.2.1	Tomato	golgi, plasma membrane	55.0	46.81
Solyc04g007690.2.1	Tomato	plasma membrane	53.27	45.19
Solyc07g006900.1.1	Tomato	plasma membrane	54.42	44.85
Solyc05g008060.2.1	Tomato	nucleus	54.04	43.03
Solyc01g068410.2.1	Tomato	extracellular, plasma membrane	28.46	41.34
Solyc04g056620.1.1	Tomato	plasma membrane	26.92	40.35

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005886	GO:GO:0006810
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0009653	GO:GO:0009719
GO:GO:0009734	GO:GO:0009791	GO:GO:0009926	GO:GO:0009987	GO:GO:0010105	GO:GO:0010252
GO:GO:0010315	GO:GO:0010329	GO:GO:0010540	GO:GO:0016020	GO:GO:0016021	GO:GO:0016049
GO:GO:0030154	GO:GO:0040007	GO:GO:0048767	GO:GO:0055085	GO:GO:1901332	UniProt:K4C6G0
InterPro:Mem_trans	PFAM:PF03547	PANTHER:PTHR31752	PANTHER:PTHR31752:SF8	EnsemblPlantsGene:Solyc06g059730.1	EnsemblPlants:Solyc06g059730.1.1
TIGRFAMs:TIGR00946	TMHMM:TMhelix	UniParc:UPI0002765D7B	SEG:seg	:	:

Description

Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:K4C6G0]

Coordinates

chr6:-:37586070..37591407

Molecular Weight (calculated)

56879.7 Da

IEP (calculated)

8.532

GRAVY (calculated)

0.379

Length

520 amino acids

Sequence
(BLAST)

001: MIGVNDFYKV MCAMVPLYFA MIVAYGSVKW WKIFSPEQCS GINRFVAVFA VPVLSFHFIS QNNPYQMDTK FILADTLSKI LVLVLLSVWA ICKGQLDWLI
101: TLFSVSTLPN TLVMGIPLLN AMYGDFTQSL MVQLVVLQCI IWYTLLLFLF EYRAATILIK NQFPGNVAAS ITKFEIDNDV ISLDGRNPLC TESEIDGNGR
201: IHVRIRRSTS SAPESAFSSS IGITPRASNL SNAEIFSVHT PLHNGDIPFG HGDLGVGFRA ASPRLSGGYA SSDAYSLQPT PRASNFNELD VTTSGNTPMW
301: VMSPVGGKVF KQASPSSKMA WESSCLNGER QGYRDDVGEK EISFRDISNF PVQEVGAADS SNTNNIIKQE MPNALVMLRL IIVMVGRKLS RNPNTYSSIL
401: GLLWSLISFK WNVGMPSLVK YSIKIISDAG LGMAMFSLAI GMAIRFIGGP LVMSATSIAV GLKGVRLHTA IVQAALPQGI VPFVFAREYG LHPDILSTGV
501: IFGMLVSLPV TLLYYVLLGL

Best Arabidopsis Sequence Match ( AT1G77110.1 )
(BLAST)

001: MITGNEFYTV MCAMAPLYFA MFVAYGSVKW CKIFTPAQCS GINRFVSVFA VPVLSFHFIS QNNPYKMDTM FILADTLSKI FVFVLLSLWA VFFKAGGLDW
101: LITLFSIATL PNTLVMGIPL LQAMYGDYTQ TLMVQLVVLQ CIIWYTLLLF LFELRAARLL IRAEFPGQAA GSIAKIQVDD DVISLDGMDP LRTETETDVN
201: GRIRLRIRRS VSSVPDSVMS SSLCLTPRAS NLSNAEIFSV NTPNNRFFHG GGGSGTLQFY NGSNEIMFCN GDLGGFGFTR PGLGASPRRL SGYASSDAYS
301: LQPTPRASNF NELDVNGNGT PVWMKSPAAG RIYRQSSPKM MWESGQRHAA KDINGSVPEK EISFRDALKA APQATAAGGG ASMEEGAAGK DTTPVAAIGK
401: QEMPSAIVMM RLILTVVGRK LSRNPNTYSS LLGLVWSLIS FKWNIPMPNI VDFSIKIISD AGLGMAMFSL GLFMALQPKM IPCGAKKATM GMLIRFISGP
501: LFMAGASLLV GLRGSRLHAA IVQAALPQGI VPFVFAREYN LHPDLLSTLV IFGMIVSLPV TILYYVLLGL

Arabidopsis Description

PIN6Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178W8W8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.