Factsheet for VIT_18s0001g15420.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18110	Soybean	extracellular	19.09	83.33
PGSC0003DMT400079013	Potato	plasma membrane	79.64	82.95
Solyc06g059730.1.1	Tomato	plasma membrane	78.18	82.69
KRH15941	Soybean	plasma membrane	73.09	75.71
KRH18109	Soybean	plasma membrane	46.18	72.57
AT1G77110.1	Thale cress	plasma membrane	71.82	69.3
CDX88341	Canola	plasma membrane	70.0	67.9
CDX87543	Canola	plasma membrane	69.82	67.72
Bra015694.1-P	Field mustard	plasma membrane	69.82	66.9
GSMUA_Achr8P08300_001	Banana	plasma membrane	68.36	65.73
GSMUA_Achr3P22010_001	Banana	plasma membrane	59.45	64.5
VIT_14s0108g00020.t01	Wine grape	endoplasmic reticulum, plasma membrane	35.82	55.18
VIT_08s0040g01230.t01	Wine grape	golgi, plasma membrane	55.09	50.75
VIT_08s0040g01220.t01	Wine grape	plasma membrane	55.27	50.75
VIT_17s0000g02420.t01	Wine grape	plasma membrane	54.55	50.51
VIT_05s0062g01120.t01	Wine grape	plasma membrane	41.09	48.81
VIT_01s0011g04860.t01	Wine grape	golgi, plasma membrane	56.36	47.77
VIT_04s0023g00320.t01	Wine grape	plasma membrane	30.73	47.47
VIT_11s0052g00440.t01	Wine grape	plasma membrane	52.36	45.71
VIT_04s0023g00330.t01	Wine grape	extracellular, golgi	6.91	45.24
VIT_04s0023g00450.t01	Wine grape	golgi, plasma membrane	26.91	41.0

Protein Annotations

EntrezGene:100250503	wikigene:100250503	MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	EMBL:AM450010	InterPro:Auxin_eff_plant
ProteinID:CAN65343	ProteinID:CAN65343.1	ProteinID:CCB46097	ProteinID:CCB46097.1	UniProt:F6H096	EMBL:FN595227
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005886	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0009653	GO:GO:0009719	GO:GO:0009734	GO:GO:0009791	GO:GO:0009926
GO:GO:0009987	GO:GO:0010105	GO:GO:0010252	GO:GO:0010315	GO:GO:0010329	GO:GO:0010540
GO:GO:0016020	GO:GO:0016021	GO:GO:0016049	GO:GO:0030154	GO:GO:0040007	GO:GO:0048767
GO:GO:0055085	GO:GO:1901332	EntrezGene:LOC100250503	wikigene:LOC100250503	InterPro:Mem_trans	PFAM:PF03547
PANTHER:PTHR31752	PANTHER:PTHR31752:SF8	TIGRFAMs:TIGR00946	TMHMM:TMhelix	UniParc:UPI000198526F	ArrayExpress:VIT_18s0001g15420
EnsemblPlantsGene:VIT_18s0001g15420	EnsemblPlants:VIT_18s0001g15420.t01	RefSeq:XP_002278449	RefSeq:XP_002278449.2	SEG:seg	:

Description

Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:F6H096]

Coordinates

chr18:+:13551359..13554243

Molecular Weight (calculated)

60067.5 Da

IEP (calculated)

8.956

GRAVY (calculated)

0.297

Length

550 amino acids

Sequence
(BLAST)

001: MISADDFYKV MCAMVPLYFA MLVAYGSVKW CKIFSPEQCS GINRFVAVFA VPVLSFHFIS QNNPYEMDTK FIVADTLSKL LVLVLLSVWA ILFKGGLDWL
101: ITLFSLATLP NTLVMGIPLL NAMYGDFTQS LMVQLVVLQC IIWYTLLLFL FEYRAATLLI KNQFPGSTAA SISKFEIDGD VISLDGRDPV RTESEIDGNG
201: RIRVRIRRST SSAPDSALSS SMGITPRASN LSGAEIFSVN TPAPLHEYHN GNADIAFGNG DLGFGYRSAS PRLSGYASSD AYSLQPTPRA SNFNELDTTT
301: ITTTNTPFWV RSPVAGKVYR QQSPAFSGVR MVWESPGKCN GGGGERQGCK DVVGEREISF RDSSKFPVAE EEDPKATATG QDMPRTHVML RLILTMVGRK
401: LSRNPNTYSS VLGLLWSLIS FKWNVGMPSL VKYSIKIISD AGLGMAMFSL GLFMALQPRI IACGTKRATM GMGIRFICGP ILMSAASIAV GLRGVRLHAA
501: IVQASLPQGI VPFVFAREYG LHPDILSTGV IFGMLVSLPV TLLYYILLGL

Best Arabidopsis Sequence Match ( AT1G77110.1 )
(BLAST)

001: MITGNEFYTV MCAMAPLYFA MFVAYGSVKW CKIFTPAQCS GINRFVSVFA VPVLSFHFIS QNNPYKMDTM FILADTLSKI FVFVLLSLWA VFFKAGGLDW
101: LITLFSIATL PNTLVMGIPL LQAMYGDYTQ TLMVQLVVLQ CIIWYTLLLF LFELRAARLL IRAEFPGQAA GSIAKIQVDD DVISLDGMDP LRTETETDVN
201: GRIRLRIRRS VSSVPDSVMS SSLCLTPRAS NLSNAEIFSV NTPNNRFFHG GGGSGTLQFY NGSNEIMFCN GDLGGFGFTR PGLGASPRRL SGYASSDAYS
301: LQPTPRASNF NELDVNGNGT PVWMKSPAAG RIYRQSSPKM MWESGQRHAA KDINGSVPEK EISFRDALKA APQATAAGGG ASMEEGAAGK DTTPVAAIGK
401: QEMPSAIVMM RLILTVVGRK LSRNPNTYSS LLGLVWSLIS FKWNIPMPNI VDFSIKIISD AGLGMAMFSL GLFMALQPKM IPCGAKKATM GMLIRFISGP
501: LFMAGASLLV GLRGSRLHAA IVQAALPQGI VPFVFAREYN LHPDLLSTLV IFGMIVSLPV TILYYVLLGL

Arabidopsis Description

PIN6Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178W8W8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.