CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
golgi 5
plasma membrane 6
endoplasmic reticulum 4
vacuole 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87543	Canola	plasma membrane	97.88	97.88
AT1G77110.1	Thale cress	plasma membrane	88.54	88.07
VIT_18s0001g15420.t01	Wine grape	plasma membrane	67.9	70.0
KRH18110	Soybean	extracellular	15.52	69.84
Solyc06g059730.1.1	Tomato	plasma membrane	64.02	69.81
PGSC0003DMT400079013	Potato	plasma membrane	64.9	69.7
KRH15941	Soybean	plasma membrane	61.9	66.1
KRH18109	Soybean	plasma membrane	40.21	65.14
GSMUA_Achr3P22010_001	Banana	plasma membrane	52.38	58.58
GSMUA_Achr8P08300_001	Banana	plasma membrane	58.91	58.39
CDX82059	Canola	golgi, plasma membrane	48.5	52.28
CDX96484	Canola	plasma membrane	48.15	51.03
CDY47745	Canola	golgi, plasma membrane	49.74	49.13
CDX69445	Canola	golgi, plasma membrane, vacuole	29.98	48.85
CDY67254	Canola	golgi, plasma membrane, vacuole	29.98	48.85
CDY40380	Canola	plasma membrane	48.15	48.58
CDX96288	Canola	golgi, plasma membrane	49.56	48.2
CDY25767	Canola	plasma membrane	48.68	48.17
CDY68262	Canola	plasma membrane	49.56	48.12
CDY63826	Canola	plasma membrane	47.62	47.96
CDY38263	Canola	plasma membrane	48.85	47.92
CDY23471	Canola	golgi, plasma membrane	41.62	47.87
CDY12491	Canola	plasma membrane	48.32	47.74
CDX91695	Canola	plasma membrane	47.8	47.46
CDX68327	Canola	plasma membrane	40.56	47.42
CDX70699	Canola	golgi, plasma membrane, vacuole	29.1	47.41
CDY41467	Canola	plasma membrane	47.44	46.06
CDX69551	Canola	endoplasmic reticulum, extracellular, vacuole	18.17	45.98
CDY11886	Canola	plasma membrane	49.56	45.4
CDY53978	Canola	plasma membrane	47.44	45.13
CDY20694	Canola	plasma membrane	49.03	43.78
CDY63766	Canola	golgi, plasma membrane	22.93	43.77
CDX85565	Canola	plasma membrane	27.87	43.65
CDY69709	Canola	plasma membrane	46.38	43.4
CDX88606	Canola	plasma membrane	48.85	43.08
CDX78697	Canola	plasma membrane	29.28	42.13
CDY09501	Canola	plasma membrane	41.8	42.02
CDY72296	Canola	golgi, plasma membrane	33.33	41.72
CDY66594	Canola	plasma membrane	29.45	37.19
CDX85566	Canola	cytosol	2.29	4.71

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	GO:A0A078DGD5	InterPro:Auxin_eff_plant	EnsemblPlants:CDX88341	ProteinID:CDX88341
ProteinID:CDX88341.1	GO:GO:0005575	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
EnsemblPlantsGene:GSBRNA2T00147858001	InterPro:Mem_trans	PFAM:PF03547	PANTHER:PTHR31752	PANTHER:PTHR31752:SF8	TIGRFAMs:TIGR00946
TMHMM:TMhelix	UniParc:UPI0004EAF753	SEG:seg	:	:	:

Description

BnaC06g37850D

Coordinates

chrLK031855:+:455123..458515

Molecular Weight (calculated)

61692.1 Da

IEP (calculated)

9.380

GRAVY (calculated)

0.409

Length

567 amino acids

Sequence
(BLAST)

001: MITGSEFYKV MCAMAPLYFA MFVAYGSVKW WKIFTAEQCS GINRFVSVFA VPILSFHFIS QNNPYKMDMM FIIADTLSKV MVFVLLSLWA ILFKSGGLDW
101: LITLFSVATL PNTLVMGIPL LQAMYGEYTQ NLMVQLVVLQ CIIWYTLLLF LFELRAARLL IRTEFPGQAA GAITRIQVDD DVISLDGMDP LRTETETDIN
201: GRVRLRIRRS ISSVPDSVVS SSLCLTPRAS NLSNAEIFSV NTPNRFFNGG GGSGALQFYN GNNEIMFCNG DLGGFGFTRP GCGVSPRRLS GYASSDAYSL
301: QPTPRASNFN ELDVNGAGTP VWMKSPAAGK IYRHAASPKM TWESGQRHVG KDSINEKEIS FRDALRAAPP PTAAGVACSM EEGAAGKETA PVAAIGRQEM
401: PSAALMVRLI LTVVGRKLSR NPNTYSSIIG LVWSLISFRW NIALPDIVAF SIKIISDAGL GMAMFSLGLF MALQPKMIAC GAKKATLGML IRFISGPAFM
501: AAASVLVGLK GSRLHAAIVQ AALPQGIVPF VFAREYGLHP DLLSTLVIFG MMVSLPVTIL YYVLLGL

Best Arabidopsis Sequence Match ( AT1G77110.1 )
(BLAST)

001: MITGNEFYTV MCAMAPLYFA MFVAYGSVKW CKIFTPAQCS GINRFVSVFA VPVLSFHFIS QNNPYKMDTM FILADTLSKI FVFVLLSLWA VFFKAGGLDW
101: LITLFSIATL PNTLVMGIPL LQAMYGDYTQ TLMVQLVVLQ CIIWYTLLLF LFELRAARLL IRAEFPGQAA GSIAKIQVDD DVISLDGMDP LRTETETDVN
201: GRIRLRIRRS VSSVPDSVMS SSLCLTPRAS NLSNAEIFSV NTPNNRFFHG GGGSGTLQFY NGSNEIMFCN GDLGGFGFTR PGLGASPRRL SGYASSDAYS
301: LQPTPRASNF NELDVNGNGT PVWMKSPAAG RIYRQSSPKM MWESGQRHAA KDINGSVPEK EISFRDALKA APQATAAGGG ASMEEGAAGK DTTPVAAIGK
401: QEMPSAIVMM RLILTVVGRK LSRNPNTYSS LLGLVWSLIS FKWNIPMPNI VDFSIKIISD AGLGMAMFSL GLFMALQPKM IPCGAKKATM GMLIRFISGP
501: LFMAGASLLV GLRGSRLHAA IVQAALPQGI VPFVFAREYN LHPDLLSTLV IFGMIVSLPV TILYYVLLGL

Arabidopsis Description

PIN6Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178W8W8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.