Factsheet for PGSC0003DMT400079013

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
golgi 3
plasma membrane 5
extracellular 2
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g059730.1.1	Tomato	plasma membrane	94.51	95.96
KRH18110	Soybean	extracellular	19.7	82.54
VIT_18s0001g15420.t01	Wine grape	plasma membrane	82.95	79.64
KRH15941	Soybean	plasma membrane	69.51	69.11
AT1G77110.1	Thale cress	plasma membrane	71.02	65.79
CDX88341	Canola	plasma membrane	69.7	64.9
CDX87543	Canola	plasma membrane	69.51	64.73
KRH18109	Soybean	plasma membrane	42.61	64.29
GSMUA_Achr8P08300_001	Banana	plasma membrane	69.32	63.99
Bra015694.1-P	Field mustard	plasma membrane	69.51	63.94
GSMUA_Achr3P22010_001	Banana	plasma membrane	60.8	63.31
PGSC0003DMT400072459	Potato	golgi, plasma membrane	55.87	50.26
PGSC0003DMT400021600	Potato	golgi, plasma membrane	55.87	49.66
PGSC0003DMT400003569	Potato	plasma membrane	24.43	49.62
PGSC0003DMT400017300	Potato	plasma membrane	9.28	49.49
PGSC0003DMT400014752	Potato	golgi, plasma membrane	55.68	47.88
PGSC0003DMT400048251	Potato	plasma membrane	54.73	45.8
PGSC0003DMT400078330	Potato	golgi, plasma membrane	55.11	44.5
PGSC0003DMT400046253	Potato	plasma membrane	28.6	42.54
PGSC0003DMT400017301	Potato	golgi, plasma membrane	13.64	40.68
PGSC0003DMT400015267	Potato	cytosol	34.28	39.01
PGSC0003DMT400027309	Potato	extracellular, plasma membrane, vacuole	22.35	36.76

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0009653
GO:GO:0009719	GO:GO:0009734	GO:GO:0009791	GO:GO:0009926	GO:GO:0009987	GO:GO:0010105
GO:GO:0010540	GO:GO:0016020	GO:GO:0016021	GO:GO:0016049	GO:GO:0030154	GO:GO:0040007
GO:GO:0048767	GO:GO:0055085	GO:GO:1901332	UniProt:M1D143	InterPro:Mem_trans	PFAM:PF03547
EnsemblPlantsGene:PGSC0003DMG400030755	PGSC:PGSC0003DMG400030755	EnsemblPlants:PGSC0003DMT400079013	PANTHER:PTHR31752	PANTHER:PTHR31752:SF8	TIGRFAMs:TIGR00946
TMHMM:TMhelix	UniParc:UPI000296B70A	SEG:seg	:	:	:

Description

Auxin efflux carrier component [Source:PGSC_GENE;Acc:PGSC0003DMG400030755]

Coordinates

chr6:-:41187368..41193747

Molecular Weight (calculated)

57655.8 Da

IEP (calculated)

8.902

GRAVY (calculated)

0.398

Length

528 amino acids

Sequence
(BLAST)

001: MVPLYFAMIV AYGSVKWWKI FSPEQCSGIN RFVAVFAVPV LSFHFISQNN PYQMDTKFIL ADTLSKILVL VLLSVWAICK GQLDWLITLF SVSTLPNTLV
101: MGIPLLNAMY GDFTQSLMVQ LVVLQCIIWY TLLLFLFEYR AATILIKNQF PGNVAASITK FEIDNDVISL DGRNPLCTES EINGNGRIHV RIRRSTSSAP
201: ESAFSSSIGI TPRASNLSNA EIFSVHTPLH NGDIPFGHGD LGVGFRAAST RLSGGYASSD AYSLQPTPRG SNFNELDTIT VTTSGNTPMW VMSPVAGKVF
301: KQASPSSKMA WESSCLNGER QGYRDDVGEK EISFRDISNF PVQEVGAADS LNTNDIIKQE MPNALVMLRL IIVMVGRKLS RNPNTYSSIL GLLWSLISFK
401: WNVGMPSLVK YSIKIISDAG LGMAMFSLGL FMALQPRIIA CGTKMATIGM AIRFIGGPLV MSAASIAVGL KGVRLHTAIV QAALPQGIVP FVFAREYGLH
501: PDILSTGVIF GMLVSLPVTL LYYVLLGL

Best Arabidopsis Sequence Match ( AT1G77110.1 )
(BLAST)

001: MITGNEFYTV MCAMAPLYFA MFVAYGSVKW CKIFTPAQCS GINRFVSVFA VPVLSFHFIS QNNPYKMDTM FILADTLSKI FVFVLLSLWA VFFKAGGLDW
101: LITLFSIATL PNTLVMGIPL LQAMYGDYTQ TLMVQLVVLQ CIIWYTLLLF LFELRAARLL IRAEFPGQAA GSIAKIQVDD DVISLDGMDP LRTETETDVN
201: GRIRLRIRRS VSSVPDSVMS SSLCLTPRAS NLSNAEIFSV NTPNNRFFHG GGGSGTLQFY NGSNEIMFCN GDLGGFGFTR PGLGASPRRL SGYASSDAYS
301: LQPTPRASNF NELDVNGNGT PVWMKSPAAG RIYRQSSPKM MWESGQRHAA KDINGSVPEK EISFRDALKA APQATAAGGG ASMEEGAAGK DTTPVAAIGK
401: QEMPSAIVMM RLILTVVGRK LSRNPNTYSS LLGLVWSLIS FKWNIPMPNI VDFSIKIISD AGLGMAMFSL GLFMALQPKM IPCGAKKATM GMLIRFISGP
501: LFMAGASLLV GLRGSRLHAA IVQAALPQGI VPFVFAREYN LHPDLLSTLV IFGMIVSLPV TILYYVLLGL

Arabidopsis Description

PIN6Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178W8W8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.