Factsheet for GSMUA_Achr8P08300_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 5
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18110	Soybean	extracellular	17.83	80.95
GSMUA_Achr3P22010_001	Banana	plasma membrane	69.23	78.11
Solyc06g059730.1.1	Tomato	plasma membrane	63.11	69.42
PGSC0003DMT400079013	Potato	plasma membrane	63.99	69.32
VIT_18s0001g15420.t01	Wine grape	plasma membrane	65.73	68.36
KRH15941	Soybean	plasma membrane	62.41	67.23
GSMUA_Achr9P15520_001	Banana	plasma membrane	42.31	60.96
KRH18109	Soybean	plasma membrane	36.89	60.29
AT1G77110.1	Thale cress	plasma membrane	59.44	59.65
CDX88341	Canola	plasma membrane	58.39	58.91
CDX87543	Canola	plasma membrane	58.04	58.55
Bra015694.1-P	Field mustard	plasma membrane	58.04	57.84
GSMUA_Achr8P29780_001	Banana	golgi, plasma membrane, vacuole	47.03	55.58
GSMUA_Achr4P00310_001	Banana	golgi, plasma membrane, vacuole	28.85	53.75
GSMUA_Achr8P23120_001	Banana	plasma membrane	47.2	53.57
GSMUA_Achr8P09440_001	Banana	plasma membrane	50.52	52.93
GSMUA_Achr2P00910_001	Banana	golgi, plasma membrane, vacuole	49.83	51.17
GSMUA_Achr7P07300_001	Banana	golgi, plasma membrane	50.17	50.44
GSMUA_Achr1P15720_001	Banana	plasma membrane	44.76	49.9
GSMUA_Achr11P...	Banana	extracellular, plasma membrane, vacuole	27.97	49.84
GSMUA_Achr11P...	Banana	golgi, plasma membrane, vacuole	27.8	48.92
GSMUA_Achr9P27160_001	Banana	plasma membrane	46.85	48.64
GSMUA_Achr3P07280_001	Banana	plasma membrane	49.65	48.55
GSMUA_AchrUn_...	Banana	golgi, plasma membrane, vacuole	30.59	47.95
GSMUA_Achr5P25220_001	Banana	golgi, plasma membrane, vacuole	27.27	47.85
GSMUA_Achr5P25210_001	Banana	extracellular, golgi, vacuole	27.27	47.85
GSMUA_Achr7P17140_001	Banana	plasma membrane	48.6	47.77
GSMUA_Achr1P25190_001	Banana	golgi, plasma membrane, vacuole	49.65	46.79
GSMUA_Achr5P25200_001	Banana	cytosol, extracellular, plasma membrane	9.44	34.39

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	GO:GO:0005575	GO:GO:0006810	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	EnsemblPlantsGene:GSMUA_Achr8G08300_001	EnsemblPlants:GSMUA_Achr8P08300_001	EnsemblPlants:GSMUA_Achr8T08300_001	UniProt:M0TNN3
InterPro:Mem_trans	PFAM:PF03547	PANTHER:PTHR31752	PANTHER:PTHR31752:SF8	TIGRFAMs:TIGR00946	TMHMM:TMhelix
UniParc:UPI0002952338	SEG:seg	:	:	:	:

Description

Probable auxin efflux carrier component 6 [Source:GMGC_GENE;Acc:GSMUA_Achr8G08300_001]

Coordinates

chr8:-:5557454..5560039

Molecular Weight (calculated)

63465.0 Da

IEP (calculated)

8.339

GRAVY (calculated)

0.339

Length

572 amino acids

Sequence
(BLAST)

001: MITWEDFYTV MCAMIPLYFA MFLAYGSVKW WKIFTPEQCS GINRFVATFA VPVLSFHFIS HNNPYQMDSR FILADTLSKL LVLMAISLWA ALSAAFASPR
101: RRGRRLDWVI TLFSVGTLPN TLVMGIPLLR AMYGDFTQSL MVQLVVLQCI IWYTLLLFLF EYRAATLLIE DQFPGTAAAA IAKFEIDGDI ISLDGRDPIQ
201: AESEIDADGR LRVRIRRSTS SAPGSGMSSS LGITPRRLPH PSGYASSDAY SLQPTPRASN FNELEICTPV WSTRMSGVST HMPSAAVRSL FGLCLPWHHI
301: EDKEKTSHYS DTAVIYNTTQ IHGLRFFNNV SFLEQHCCYS HVMAGSSAAV TVQGCRRCSL SLRMPCNLES HYVLGEKDLS FRSTSKFVVR KEDEIEMEGE
401: AEQEMPAALV MLRLILTVVG RKLSRNPNTY SSILGLLWSL ISFKWDISMP SLLKESIKII SDAGLGMAMF SLGLFMALQP RIIACGPKMA AISMAIRFLS
501: GPTVMSAASM AVGLRGVRLH TAIVQAALPQ GIVPFVFARE YGLHPDILST GVIFGMLVSL PVTLLYYILL GL

Best Arabidopsis Sequence Match ( AT1G77110.1 )
(BLAST)

001: MITGNEFYTV MCAMAPLYFA MFVAYGSVKW CKIFTPAQCS GINRFVSVFA VPVLSFHFIS QNNPYKMDTM FILADTLSKI FVFVLLSLWA VFFKAGGLDW
101: LITLFSIATL PNTLVMGIPL LQAMYGDYTQ TLMVQLVVLQ CIIWYTLLLF LFELRAARLL IRAEFPGQAA GSIAKIQVDD DVISLDGMDP LRTETETDVN
201: GRIRLRIRRS VSSVPDSVMS SSLCLTPRAS NLSNAEIFSV NTPNNRFFHG GGGSGTLQFY NGSNEIMFCN GDLGGFGFTR PGLGASPRRL SGYASSDAYS
301: LQPTPRASNF NELDVNGNGT PVWMKSPAAG RIYRQSSPKM MWESGQRHAA KDINGSVPEK EISFRDALKA APQATAAGGG ASMEEGAAGK DTTPVAAIGK
401: QEMPSAIVMM RLILTVVGRK LSRNPNTYSS LLGLVWSLIS FKWNIPMPNI VDFSIKIISD AGLGMAMFSL GLFMALQPKM IPCGAKKATM GMLIRFISGP
501: LFMAGASLLV GLRGSRLHAA IVQAALPQGI VPFVFAREYN LHPDLLSTLV IFGMIVSLPV TILYYVLLGL

Arabidopsis Description

PIN6Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178W8W8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.