Factsheet for GSMUA_Achr3P07280_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P23120_001	Banana	plasma membrane	75.56	87.7
GSMUA_Achr7P07300_001	Banana	golgi, plasma membrane	74.87	76.98
GSMUA_Achr8P09440_001	Banana	plasma membrane	67.35	72.16
GSMUA_Achr9P27160_001	Banana	plasma membrane	67.35	71.51
GSMUA_Achr9P15520_001	Banana	plasma membrane	48.03	70.78
GSMUA_Achr2P00910_001	Banana	golgi, plasma membrane, vacuole	66.5	69.84
GSMUA_Achr8P29780_001	Banana	golgi, plasma membrane, vacuole	55.21	66.74
GSMUA_Achr1P15720_001	Banana	plasma membrane	55.9	63.74
GSMUA_Achr7P17140_001	Banana	plasma membrane	63.08	63.4
GSMUA_Achr1P25190_001	Banana	golgi, plasma membrane, vacuole	64.62	62.27
GSMUA_Achr4P00310_001	Banana	golgi, plasma membrane, vacuole	30.6	58.31
GSMUA_Achr3P22010_001	Banana	plasma membrane	45.47	52.47
GSMUA_Achr11P...	Banana	extracellular, plasma membrane, vacuole	27.86	50.78
GSMUA_Achr11P...	Banana	golgi, plasma membrane, vacuole	28.21	50.77
GSMUA_AchrUn_...	Banana	golgi, plasma membrane, vacuole	31.62	50.68
GSMUA_Achr5P25220_001	Banana	golgi, plasma membrane, vacuole	28.03	50.31
GSMUA_Achr5P25210_001	Banana	extracellular, golgi, vacuole	27.86	50.0
GSMUA_Achr8P08300_001	Banana	plasma membrane	48.55	49.65
GSMUA_Achr5P25200_001	Banana	cytosol, extracellular, plasma membrane	9.23	34.39

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	GO:GO:0005575	GO:GO:0006810	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	EnsemblPlantsGene:GSMUA_Achr3G07280_001	EnsemblPlants:GSMUA_Achr3P07280_001	EnsemblPlants:GSMUA_Achr3T07280_001	UniProt:M0SCJ5
InterPro:Mem_trans	PFAM:PF03547	PANTHER:PTHR31752	PANTHER:PTHR31752:SF14	TIGRFAMs:TIGR00946	TMHMM:TMhelix
UniParc:UPI000296197E	SEG:seg	:	:	:	:

Description

Probable auxin efflux carrier component 1c [Source:GMGC_GENE;Acc:GSMUA_Achr3G07280_001]

Coordinates

chr3:-:4951419..4953887

Molecular Weight (calculated)

64156.4 Da

IEP (calculated)

9.829

GRAVY (calculated)

0.237

Length

585 amino acids

Sequence
(BLAST)

001: MITLADFYHV MTAVVPLYVA MILAYGSVKW WKIFTPDQCS GINRFVALFA VPLLSFHFIS TNNPYEMNMR FIAADTLQKL MVLAVLAAWC RLSRRGSLEW
101: TITIFSLSTL PNTLVMGIPL LKGMYGSYSG TLMVQIVVLQ CIIWYTLMLF LFEYRAARML ISEQFPDTAG AIASITVDSD VTSLDGHRDM LETEAEIKED
201: GKLHITVRRS NASRSDIYSR RSMGFSATTP RPSNLTNAEI YSLQSSRNPT PRGSSFNHND FYSMVGRSSN FGAADVHGMR GSKPNYQLPV TAATQNYPAP
301: NPSVFSAEDG GTKDLHMFVW SSSASPVSDV FGGNNTNHHE YGLPAADPSA MKEVRMAVSP GKGTTFHSLP LLIRGRYRAW NLDRFRQWTG GRKGGGHEDG
401: GDKVQGAAKG GLMRATAMPP TSVMTRLILI MVWRKLIRNP NTYSSLIGVV WSLVSFKWHV NMPDIVSHSI SILSDAGLGM AMFSLGLFMA LQPRIIACGN
501: SVAAFAMAVR FLTGPAVMAA ASIAVGLRGV LLRIAIVQAA LPQGIVPFVF AKEYNLHPDI LSTAVIFGML IALPITLVYY ILLGL

Best Arabidopsis Sequence Match ( AT1G73590.1 )
(BLAST)

001: MITAADFYHV MTAMVPLYVA MILAYGSVKW WKIFTPDQCS GINRFVALFA VPLLSFHFIA ANNPYAMNLR FLAADSLQKV IVLSLLFLWC KLSRNGSLDW
101: TITLFSLSTL PNTLVMGIPL LKGMYGNFSG DLMVQIVVLQ CIIWYTLMLF LFEYRGAKLL ISEQFPDTAG SIVSIHVDSD IMSLDGRQPL ETEAEIKEDG
201: KLHVTVRRSN ASRSDIYSRR SQGLSATPRP SNLTNAEIYS LQSSRNPTPR GSSFNHTDFY SMMASGGGRN SNFGPGEAVF GSKGPTPRPS NYEEDGGPAK
301: PTAAGTAAGA GRFHYQSGGS GGGGGAHYPA PNPGMFSPNT GGGGGTAAKG NAPVVGGKRQ DGNGRDLHMF VWSSSASPVS DVFGGGGGNH HADYSTATND
401: HQKDVKISVP QGNSNDNQYV EREEFSFGNK DDDSKVLATD GGNNISNKTT QAKVMPPTSV MTRLILIMVW RKLIRNPNSY SSLFGITWSL ISFKWNIEMP
501: ALIAKSISIL SDAGLGMAMF SLGLFMALNP RIIACGNRRA AFAAAMRFVV GPAVMLVASY AVGLRGVLLH VAIIQAALPQ GIVPFVFAKE YNVHPDILST
601: AVIFGMLIAL PITLLYYILL GL

Arabidopsis Description

PIN1Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178WFG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.