Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P15520_001 | Banana | plasma membrane | 51.86 | 63.22 |
| GSMUA_Achr7P17140_001 | Banana | plasma membrane | 74.79 | 62.2 |
| GSMUA_Achr1P25190_001 | Banana | golgi, plasma membrane, vacuole | 76.24 | 60.79 |
| GSMUA_Achr8P23120_001 | Banana | plasma membrane | 61.98 | 59.52 |
| GSMUA_Achr8P09440_001 | Banana | plasma membrane | 66.32 | 58.79 |
| GSMUA_Achr2P00910_001 | Banana | golgi, plasma membrane, vacuole | 66.53 | 57.81 |
| GSMUA_Achr4P00310_001 | Banana | golgi, plasma membrane, vacuole | 36.36 | 57.33 |
| CDX68327 | Canola | plasma membrane | 57.02 | 56.91 |
| CDY40380 | Canola | plasma membrane | 65.7 | 56.58 |
| CDY63826 | Canola | plasma membrane | 65.7 | 56.48 |
| CDY25767 | Canola | plasma membrane | 66.74 | 56.37 |
| CDX96288 | Canola | golgi, plasma membrane | 67.56 | 56.09 |
| CDY12491 | Canola | plasma membrane | 66.32 | 55.92 |
| GSMUA_Achr7P07300_001 | Banana | golgi, plasma membrane | 65.7 | 55.89 |
| CDY68262 | Canola | plasma membrane | 67.36 | 55.82 |
| CDY23471 | Canola | golgi, plasma membrane | 56.82 | 55.78 |
| GSMUA_Achr3P07280_001 | Banana | plasma membrane | 66.74 | 55.21 |
| GSMUA_Achr1P15720_001 | Banana | plasma membrane | 58.06 | 54.78 |
| KRH49577 | Soybean | plasma membrane | 62.81 | 54.68 |
| KRH38202 | Soybean | plasma membrane | 71.07 | 54.26 |
| Solyc04g007690.2.1 | Tomato | plasma membrane | 68.59 | 54.16 |
| Bra012358.1-P | Field mustard | golgi, plasma membrane | 66.74 | 53.57 |
| CDX91695 | Canola | plasma membrane | 62.6 | 53.06 |
| GSMUA_Achr9P27160_001 | Banana | plasma membrane | 59.92 | 52.63 |
| AT2G01420.2 | Thale cress | plasma membrane | 66.74 | 52.44 |
| Bra016366.1-P | Field mustard | golgi, plasma membrane | 63.02 | 52.23 |
| VIT_01s0011g04860.t01 | Wine grape | golgi, plasma membrane | 69.83 | 52.08 |
| CDY41467 | Canola | plasma membrane | 62.81 | 52.05 |
| Solyc05g008060.2.1 | Tomato | nucleus | 69.42 | 51.45 |
| Os05t0576900-01 | Rice | golgi, plasma membrane, vacuole | 62.81 | 51.44 |
| GSMUA_Achr11P... | Banana | extracellular, plasma membrane, vacuole | 34.09 | 51.4 |
| PGSC0003DMT400078330 | Potato | golgi, plasma membrane | 69.42 | 51.38 |
| AT1G23080.1 | Thale cress | plasma membrane | 65.7 | 51.37 |
| KRG89296 | Soybean | plasma membrane | 70.66 | 51.35 |
| KRH50369 | Soybean | plasma membrane | 70.25 | 51.13 |
| AT1G70940.1 | Thale cress | plasma membrane | 67.15 | 50.78 |
| GSMUA_Achr11P... | Banana | golgi, plasma membrane, vacuole | 34.09 | 50.77 |
| GSMUA_Achr3P22010_001 | Banana | plasma membrane | 53.1 | 50.69 |
| Zm00001d045219_P001 | Maize | plasma membrane | 60.74 | 50.6 |
| EER89254 | Sorghum | golgi, plasma membrane, vacuole | 62.6 | 50.5 |
| CDY09501 | Canola | plasma membrane | 57.85 | 49.65 |
| GSMUA_AchrUn_... | Banana | golgi, plasma membrane, vacuole | 37.4 | 49.59 |
| TraesCS1D01G422900.1 | Wheat | golgi, plasma membrane, vacuole | 60.95 | 49.5 |
| GSMUA_Achr5P25220_001 | Banana | golgi, plasma membrane, vacuole | 33.06 | 49.08 |
| TraesCS1B01G445400.1 | Wheat | golgi, plasma membrane, vacuole | 60.54 | 49.08 |
| TraesCS1A01G415400.1 | Wheat | golgi, plasma membrane, vacuole | 60.54 | 48.91 |
| HORVU1Hr1G072970.9 | Barley | golgi, plasma membrane, vacuole | 59.09 | 48.89 |
| HORVU1Hr1G091030.2 | Barley | golgi, plasma membrane, vacuole | 60.74 | 48.43 |
| GSMUA_Achr5P25210_001 | Banana | extracellular, golgi, vacuole | 32.23 | 47.85 |
| Bra003938.1-P | Field mustard | golgi, plasma membrane | 53.51 | 47.44 |
| GSMUA_Achr8P08300_001 | Banana | plasma membrane | 55.58 | 47.03 |
| PGSC0003DMT400015267 | Potato | cytosol | 43.8 | 45.69 |
| Bra016173.1-P | Field mustard | plasma membrane | 58.47 | 44.78 |
| Bra026669.1-P | Field mustard | golgi, plasma membrane | 63.43 | 38.52 |
| GSMUA_Achr5P25200_001 | Banana | cytosol, extracellular, plasma membrane | 11.36 | 35.03 |
Protein Annotations
| MapMan:11.2.4.1.1 | MapMan:24.2.5.2.1 | InterPro:Auxin_eff_plant | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0055085 | EnsemblPlantsGene:GSMUA_Achr8G29780_001 | EnsemblPlants:GSMUA_Achr8P29780_001 | EnsemblPlants:GSMUA_Achr8T29780_001 | UniProt:M0TUT0 |
| InterPro:Mem_trans | PFAM:PF03547 | PANTHER:PTHR31752 | PANTHER:PTHR31752:SF37 | TIGRFAMs:TIGR00946 | TMHMM:TMhelix |
| UniParc:UPI0002953BEF | SEG:seg | : | : | : | : |
Description
Probable auxin efflux carrier component 1b [Source:GMGC_GENE;Acc:GSMUA_Achr8G29780_001]
Coordinates
chr8:+:32054111..32056294
Molecular Weight (calculated)
52137.9 Da
IEP (calculated)
6.508
GRAVY (calculated)
0.525
Length
484 amino acids
Sequence
(BLAST)
(BLAST)
001: MISWHDLNTV LVAVVPLYVA MVLAYGSVRW WGIFSPEQCA GINRFVAVFA VPLLSFHFIS TNDPYAMNLR FVVADTLQKL LVLAALAVWS KLLRRRPFPG
101: GVSSLDLSIT AFSLSTLPNT LVIGIPLLVA MYGPYSGSLM VQVVVLQCII WYTLMLFLFE YRAARLLVAD QFPDTAASIV SFRVDHDVDS LDAGAAETAA
201: EFNGDGKIYV TVRKSTSSRR GSNCNNADLD NDHYATEELH MFVWSSSPSP VSDHVDHGAK EIPVVVPADV PFNGLTTKGF DEEEAANYKG AGGGEGGGPS
301: DSDGGPHQMP PAGVMTRLIL IMVWRKLVRN PNTCSSLVGL LWSLVAFRWN ITMPKVVEKS ISILSDAGLG MAMFSLGDAV ESSTGLFMAL QPRIIACGNR
401: VAALAMVIRF VAGPATMAVS SVAVGLRGTL LHVAIVQAAL PQGIVPFVFA KEYNLHPAIL STAVIFGMLI ALPITLLYYI LLGL
101: GVSSLDLSIT AFSLSTLPNT LVIGIPLLVA MYGPYSGSLM VQVVVLQCII WYTLMLFLFE YRAARLLVAD QFPDTAASIV SFRVDHDVDS LDAGAAETAA
201: EFNGDGKIYV TVRKSTSSRR GSNCNNADLD NDHYATEELH MFVWSSSPSP VSDHVDHGAK EIPVVVPADV PFNGLTTKGF DEEEAANYKG AGGGEGGGPS
301: DSDGGPHQMP PAGVMTRLIL IMVWRKLVRN PNTCSSLVGL LWSLVAFRWN ITMPKVVEKS ISILSDAGLG MAMFSLGDAV ESSTGLFMAL QPRIIACGNR
401: VAALAMVIRF VAGPATMAVS SVAVGLRGTL LHVAIVQAAL PQGIVPFVFA KEYNLHPAIL STAVIFGMLI ALPITLLYYI LLGL
001: MITWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS SNNPYAMNLR FIAADTLQKL IMLTLLIIWA NFTRSGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEYRGAKIL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAQIGDDG
201: KLHVTVRKSN ASRRSFYGGG GTNMTPRPSN LTGAEIYSLN TTPRGSNFNH SDFYSMMGFP GGRLSNFGPA DMYSVQSSRG PTPRPSNFEE SCAMASSPRF
301: GYYPGGAPGS YPAPNPEFST GNKTGSKAPK ENHHHVGKSN SNDAKELHMF VWGSNGSPVS DRAGLQVDNG ANEQVGKSDQ GGAKEIRMLI SDHTQNAGPM
401: NGDYGGEEES ERVKEVPNGL HKLRCNSTAE LNPKEAIETG ETVPVKHMPP ASVMTRLILI MVWRKLIRNP NTYSSLIGLI WALVAFRWDV AMPKIIQQSI
501: SILSDAGLGM AMFSLGESSF YSVSFFR
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEYRGAKIL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAQIGDDG
201: KLHVTVRKSN ASRRSFYGGG GTNMTPRPSN LTGAEIYSLN TTPRGSNFNH SDFYSMMGFP GGRLSNFGPA DMYSVQSSRG PTPRPSNFEE SCAMASSPRF
301: GYYPGGAPGS YPAPNPEFST GNKTGSKAPK ENHHHVGKSN SNDAKELHMF VWGSNGSPVS DRAGLQVDNG ANEQVGKSDQ GGAKEIRMLI SDHTQNAGPM
401: NGDYGGEEES ERVKEVPNGL HKLRCNSTAE LNPKEAIETG ETVPVKHMPP ASVMTRLILI MVWRKLIRNP NTYSSLIGLI WALVAFRWDV AMPKIIQQSI
501: SILSDAGLGM AMFSLGESSF YSVSFFR
Arabidopsis Description
PIN7Auxin efflux carrier component 7 [Source:UniProtKB/Swiss-Prot;Acc:Q940Y5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.