Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 5
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g065380.2.1 | |
| Solyc11g018610.1.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400078330 | Potato | golgi, plasma membrane | 99.08 | 98.93 |
| Solyc04g007690.2.1 | Tomato | plasma membrane | 81.01 | 86.3 |
| VIT_01s0011g04860.t01 | Wine grape | golgi, plasma membrane | 82.24 | 82.74 |
| CDY25767 | Canola | plasma membrane | 72.43 | 82.55 |
| CDY12491 | Canola | plasma membrane | 72.43 | 82.4 |
| CDX96288 | Canola | golgi, plasma membrane | 72.89 | 81.65 |
| CDY68262 | Canola | plasma membrane | 72.74 | 81.34 |
| Bra012358.1-P | Field mustard | golgi, plasma membrane | 74.73 | 80.93 |
| CDY40380 | Canola | plasma membrane | 69.53 | 80.78 |
| CDY63826 | Canola | plasma membrane | 69.37 | 80.46 |
| CDY23471 | Canola | golgi, plasma membrane | 60.34 | 79.92 |
| AT1G23080.1 | Thale cress | plasma membrane | 75.5 | 79.64 |
| CDX68327 | Canola | plasma membrane | 58.96 | 79.38 |
| KRH38202 | Soybean | plasma membrane | 76.88 | 79.18 |
| AT1G70940.1 | Thale cress | plasma membrane | 77.18 | 78.75 |
| KRH50369 | Soybean | plasma membrane | 79.79 | 78.35 |
| KRG89296 | Soybean | plasma membrane | 79.63 | 78.08 |
| KRH49577 | Soybean | plasma membrane | 65.54 | 76.98 |
| AT2G01420.2 | Thale cress | plasma membrane | 72.28 | 76.62 |
| CDX91695 | Canola | plasma membrane | 66.62 | 76.18 |
| Bra003938.1-P | Field mustard | golgi, plasma membrane | 62.94 | 75.27 |
| CDY41467 | Canola | plasma membrane | 66.46 | 74.32 |
| Bra016366.1-P | Field mustard | golgi, plasma membrane | 66.46 | 74.32 |
| Bra016173.1-P | Field mustard | plasma membrane | 68.76 | 71.04 |
| CDY09501 | Canola | plasma membrane | 61.1 | 70.74 |
| GSMUA_Achr8P29780_001 | Banana | golgi, plasma membrane, vacuole | 51.45 | 69.42 |
| GSMUA_Achr7P17140_001 | Banana | plasma membrane | 60.95 | 68.38 |
| Solyc03g118740.2.1 | Tomato | golgi, plasma membrane | 63.55 | 67.92 |
| Solyc10g080880.1.1 | Tomato | golgi, plasma membrane | 60.95 | 67.92 |
| Solyc10g078370.1.1 | Tomato | golgi, plasma membrane | 61.72 | 67.85 |
| GSMUA_Achr1P25190_001 | Banana | golgi, plasma membrane, vacuole | 62.94 | 67.71 |
| Os01t0643300-01 | Rice | golgi, plasma membrane, vacuole | 63.71 | 67.31 |
| TraesCS3D01G221900.1 | Wheat | plasma membrane | 59.88 | 66.27 |
| TraesCS3A01G231500.1 | Wheat | plasma membrane | 60.18 | 66.05 |
| Zm00001d044083_P001 | Maize | plasma membrane | 59.72 | 63.93 |
| EES01159 | Sorghum | golgi, plasma membrane | 60.8 | 60.8 |
| Solyc07g006900.1.1 | Tomato | plasma membrane | 57.73 | 59.75 |
| Zm00001d045219_P001 | Maize | plasma membrane | 52.22 | 58.69 |
| TraesCS3B01G260700.1 | Wheat | plasma membrane | 54.36 | 58.29 |
| Os05t0576900-01 | Rice | golgi, plasma membrane, vacuole | 52.37 | 57.87 |
| EER89254 | Sorghum | golgi, plasma membrane, vacuole | 53.14 | 57.83 |
| TraesCS1D01G422900.1 | Wheat | golgi, plasma membrane, vacuole | 52.22 | 57.21 |
| Bra026669.1-P | Field mustard | golgi, plasma membrane | 69.68 | 57.09 |
| TraesCS1B01G445400.1 | Wheat | golgi, plasma membrane, vacuole | 51.91 | 56.78 |
| TraesCS1A01G415400.1 | Wheat | golgi, plasma membrane, vacuole | 51.3 | 55.93 |
| Solyc02g087660.2.1 | Tomato | plasma membrane | 30.32 | 55.46 |
| Solyc06g059730.1.1 | Tomato | plasma membrane | 43.03 | 54.04 |
| Solyc01g068410.2.1 | Tomato | extracellular, plasma membrane | 25.42 | 46.37 |
| Solyc04g056620.1.1 | Tomato | plasma membrane | 23.28 | 43.8 |
| HORVU7Hr1G038700.9 | Barley | nucleus, plastid | 23.74 | 22.3 |
Protein Annotations
| MapMan:11.2.4.1.1 | MapMan:24.2.5.2.1 | InterPro:Auxin_eff_plant | UniProt:E5KGD4 | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005886 |
| GO:GO:0006810 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009734 |
| GO:GO:0009926 | GO:GO:0009987 | GO:GO:0010252 | GO:GO:0010315 | GO:GO:0010329 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0055085 | EMBL:HQ127078 | InterPro:Mem_trans | PFAM:PF03547 | PANTHER:PTHR31752 |
| PANTHER:PTHR31752:SF36 | EnsemblPlantsGene:Solyc05g008060.2 | EnsemblPlants:Solyc05g008060.2.1 | TIGRFAMs:TIGR00946 | TMHMM:TMhelix | UniParc:UPI0001F3EF92 |
| SEG:seg | : | : | : | : | : |
Description
Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:E5KGD4]
Coordinates
chr5:+:2482150..2485589
Molecular Weight (calculated)
71201.2 Da
IEP (calculated)
7.495
GRAVY (calculated)
0.073
Length
653 amino acids
Sequence
(BLAST)
(BLAST)
001: MITWHDLYVV LTAVVPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIA MNNPYEMNFR FIAADSLQKV IMLVVLSLWA NLTKNGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQVVVLQ CIIWYTLLLF LFEYRGAKML IMEQFPETAA SIVSFKVESD VVSLDGHDFL ETDAEIGQDG
201: KLHVTVRKSN ASRRSFAMDH RPSNLTGAEI YSLSSSRNPT PRGSNFNHND FYSMMGFPGG RLSNFGPADM YSVQSSRGPT PRPSNFEENC APGGLVQSSP
301: RFGYFPTQQP APGSYPAPNP EIASAGPKST KPQQPNVQTQ KQEVQQQQQQ HQQPNAKANN HDAKELHMFV WSSSNSPVSE AGGLHVFGGN DFSANEQSGR
401: SDGAKEIRML VSDHTQNGDS KAIPQIGEFG GEDFTFGGAN GGGKDGDEEK GEKEGPTGLT KLGSSSTSEL HPKLAGVQDA GMGKQMPPAS VMTRLILIMV
501: WRKLIRNPNT YSSLIGLIWS LISFRWHVHM PKIIEKSISI LSDAGLGMAM FSLGLFMALQ PKIIACGNTV ATFAMAVRFL TGPAVMAAAS IAVGLRGTLL
601: HVAIVQAALP QGIVPFVFAK EYNVHPAILS TAVIFGMLIA LPITLVYYII LGL
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQVVVLQ CIIWYTLLLF LFEYRGAKML IMEQFPETAA SIVSFKVESD VVSLDGHDFL ETDAEIGQDG
201: KLHVTVRKSN ASRRSFAMDH RPSNLTGAEI YSLSSSRNPT PRGSNFNHND FYSMMGFPGG RLSNFGPADM YSVQSSRGPT PRPSNFEENC APGGLVQSSP
301: RFGYFPTQQP APGSYPAPNP EIASAGPKST KPQQPNVQTQ KQEVQQQQQQ HQQPNAKANN HDAKELHMFV WSSSNSPVSE AGGLHVFGGN DFSANEQSGR
401: SDGAKEIRML VSDHTQNGDS KAIPQIGEFG GEDFTFGGAN GGGKDGDEEK GEKEGPTGLT KLGSSSTSEL HPKLAGVQDA GMGKQMPPAS VMTRLILIMV
501: WRKLIRNPNT YSSLIGLIWS LISFRWHVHM PKIIEKSISI LSDAGLGMAM FSLGLFMALQ PKIIACGNTV ATFAMAVRFL TGPAVMAAAS IAVGLRGTLL
601: HVAIVQAALP QGIVPFVFAK EYNVHPAILS TAVIFGMLIA LPITLVYYII LGL
001: MISWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS TNNPYAMNLR FIAADTLQKI IMLSLLVLWA NFTRSGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEFRGAKML IMEQFPETAA SIVSFKVESD VVSLDGHDFL ETDAEIGDDG
201: KLHVTVRKSN ASRRSFCGPN MTPRPSNLTG AEIYSLSTTP RGSNFNHSDF YNMMGFPGGR LSNFGPADMY SVQSSRGPTP RPSNFEENCA MASSPRFGYY
301: PGGGAGSYPA PNPEFSSTTT STANKSVNKN PKDVNTNQQT TLPTGGKSNS HDAKELHMFV WSSNGSPVSD RAGLNVFGGA PDNDQGGRSD QGAKEIRMLV
401: PDQSHNGETK AVAHPASGDF GGEQQFSFAG KEEEAERPKD AENGLNKLAP NSTAALQSKT GLGGAEASQR KNMPPASVMT RLILIMVWRK LIRNPNTYSS
501: LIGLIWALVA FRWHVAMPKI IQQSISILSD AGLGMAMFSL GLFMALQPKL IACGNSVATF AMAVRFLTGP AVMAVAAIAI GLRGDLLRVA IVQAALPQGI
601: VPFVFAKEYN VHPAILSTGV IFGMLIALPI TLVYYILLGL
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEFRGAKML IMEQFPETAA SIVSFKVESD VVSLDGHDFL ETDAEIGDDG
201: KLHVTVRKSN ASRRSFCGPN MTPRPSNLTG AEIYSLSTTP RGSNFNHSDF YNMMGFPGGR LSNFGPADMY SVQSSRGPTP RPSNFEENCA MASSPRFGYY
301: PGGGAGSYPA PNPEFSSTTT STANKSVNKN PKDVNTNQQT TLPTGGKSNS HDAKELHMFV WSSNGSPVSD RAGLNVFGGA PDNDQGGRSD QGAKEIRMLV
401: PDQSHNGETK AVAHPASGDF GGEQQFSFAG KEEEAERPKD AENGLNKLAP NSTAALQSKT GLGGAEASQR KNMPPASVMT RLILIMVWRK LIRNPNTYSS
501: LIGLIWALVA FRWHVAMPKI IQQSISILSD AGLGMAMFSL GLFMALQPKL IACGNSVATF AMAVRFLTGP AVMAVAAIAI GLRGDLLRVA IVQAALPQGI
601: VPFVFAKEYN VHPAILSTGV IFGMLIALPI TLVYYILLGL
Arabidopsis Description
PIN3Auxin efflux carrier component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Z8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.