Factsheet for Bra012358.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra034407.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23080.1	Bra034407.1-P	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25767	Canola	plasma membrane	94.69	99.65
CDY12491	Canola	plasma membrane	92.87	97.56
AT1G23080.1	Thale cress	plasma membrane	91.38	89.01
Bra016366.1-P	Field mustard	golgi, plasma membrane	83.08	85.79
Bra003938.1-P	Field mustard	golgi, plasma membrane	72.8	80.4
PGSC0003DMT400078330	Potato	golgi, plasma membrane	81.09	74.77
Solyc05g008060.2.1	Tomato	nucleus	80.93	74.73
VIT_01s0011g04860.t01	Wine grape	golgi, plasma membrane	80.27	74.58
Bra016173.1-P	Field mustard	plasma membrane	77.94	74.37
KRH38202	Soybean	plasma membrane	77.78	73.97
Solyc04g007690.2.1	Tomato	plasma membrane	75.12	73.9
KRH50369	Soybean	plasma membrane	80.6	73.08
KRG89296	Soybean	plasma membrane	79.93	72.37
KRH49577	Soybean	plasma membrane	65.84	71.4
PGSC0003DMT400015267	Potato	cytosol	52.4	68.1
GSMUA_Achr8P29780_001	Banana	golgi, plasma membrane, vacuole	53.57	66.74
GSMUA_Achr7P17140_001	Banana	plasma membrane	62.52	64.78
GSMUA_Achr1P25190_001	Banana	golgi, plasma membrane, vacuole	65.17	64.74
TraesCS3D01G221900.1	Wheat	plasma membrane	63.18	64.58
TraesCS3A01G231500.1	Wheat	plasma membrane	63.35	64.2
Os01t0643300-01	Rice	golgi, plasma membrane, vacuole	65.34	63.75
Zm00001d044083_P001	Maize	plasma membrane	64.18	63.44
Bra008105.1-P	Field mustard	golgi, plasma membrane	63.18	61.85
Bra015983.1-P	Field mustard	plasma membrane	63.35	61.81
EES01159	Sorghum	golgi, plasma membrane	63.68	58.81
Bra026669.1-P	Field mustard	golgi, plasma membrane	76.95	58.22
Bra002763.1-P	Field mustard	plasma membrane	57.38	58.15
Bra006834.1-P	Field mustard	plasma membrane	60.53	56.85
Zm00001d045219_P001	Maize	plasma membrane	54.56	56.63
TraesCS1D01G422900.1	Wheat	golgi, plasma membrane, vacuole	55.72	56.38
EER89254	Sorghum	golgi, plasma membrane, vacuole	56.05	56.33
TraesCS1B01G445400.1	Wheat	golgi, plasma membrane, vacuole	55.72	56.28
Os05t0576900-01	Rice	golgi, plasma membrane, vacuole	54.56	55.67
TraesCS3B01G260700.1	Wheat	plasma membrane	56.05	55.5
Bra035648.1-P	Field mustard	plasma membrane	60.7	55.37
TraesCS1A01G415400.1	Wheat	golgi, plasma membrane, vacuole	54.89	55.26
Bra008722.1-P	Field mustard	golgi, plasma membrane, vacuole	28.52	50.44
Bra008615.1-P	Field mustard	golgi, plasma membrane, vacuole	28.19	48.85
Bra015694.1-P	Field mustard	plasma membrane	46.43	48.78
Bra023503.1-P	Field mustard	golgi, plasma membrane	25.87	26.13
HORVU7Hr1G038700.9	Barley	nucleus, plastid	25.21	21.87

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	EnsemblPlantsGene:Bra012358	EnsemblPlants:Bra012358.1	EnsemblPlants:Bra012358.1-P
GO:GO:0005575	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009719
GO:GO:0009734	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	UniProt:M4D798
InterPro:Mem_trans	PFAM:PF03547	PANTHER:PTHR31752	PANTHER:PTHR31752:SF36	TIGRFAMs:TIGR00946	TMHMM:TMhelix
UniParc:UPI0002541418	SEG:seg	:	:	:	:

Description

AT1G23080 (E=3e-310) PIN7 | PIN7 (PIN-FORMED 7); auxin efflux transmembrane transporter/ auxin:hydrogen symporter/ transporter

Coordinates

chrA07:+:8239257..8241719

Molecular Weight (calculated)

65422.6 Da

IEP (calculated)

7.617

GRAVY (calculated)

0.227

Length

603 amino acids

Sequence
(BLAST)

001: MITWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS TNNPYAMNLR FIAADTLQKL IMLSLLTLWA NFTRAGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQVVVLQ CIIWYTLLLF LFEYRGAKIL IMEQFPETAA SIVSFKVESD VVSLDGHDFL ETDAEVGDDG
201: KLHVTVRKSN ASRRSFCGPN MTPRPSNLTG AEIYSLSTTP RGSNFNHSDF YSVMGFSGGR LSNFGPADMY SVQSSRGPTP RPSNFDESCG MVSSPRFGYY
301: PGPTGSYPAP NPEFSTSAAS KSHHTGGKSN SHDAKELHMF VWGSNGSPVS DRPGLPLSGG SYEQAGVSDQ GAKEIRMLVS DPPEAAPTNG DFGGEEESGK
401: VKEVPNGLHK LRCNSTAELN PKEAVETGET GPGKHMPPAS VMTRLILIMV WRKLIRNPNT YSSLIGLIWA LVAFRWNVAM PKIIQGSISI LSDAGLGMAM
501: FSLGLFMALQ PKLIACGNST ATFAMAVRFL TGPAVMAVAA MAIGLRGDLL RVAIVQAALP QGIVPFVFAK EYNVHPAILS TGVIFGMLIA LPITLVYYIL
601: LGL

Best Arabidopsis Sequence Match ( AT1G23080.3 )
(BLAST)

001: MITWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS SNNPYAMNLR FIAADTLQKL IMLTLLIIWA NFTRSGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEYRGAKIL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAQIGDDG
201: KLHVTVRKSN ASRRSFYGGG GTNMTPRPSN LTGAEIYSLN TTPRGSNFNH SDFYSMMGFP GGRLSNFGPA DMYSVQSSRG PTPRPSNFEE SCAMASSPRF
301: GYYPGGAPGS YPAPNPEFST GNKTGSKAPK ENHHHVGKSN SNDAKELHMF VWGSNGSPVS DRAGLQVDNG ANEQVGKSDQ GGAKEIRMLI SDHTQNAGPM
401: NGDYGGEEES ERVKEVPNGL HKLRCNSTAE LNPKEAIETG ETVPVKHMPP ASVMTRLILI MVWRKLIRNP NTYSSLIGLI WALVAFRWDV AMPKIIQQSI
501: SILSDAGLGM AMFSLGLFMA LQPKLIACGN STATFAMAVR FFTGPAVMAV AAMAIGLRGD LLRVAIVQAA LPQGIVPFVF AKEYNVHPAI LSTGVIFGML
601: IALPITLVYY ILLGL

Arabidopsis Description

PIN7Auxin efflux carrier component 7 [Source:UniProtKB/Swiss-Prot;Acc:Q940Y5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.