Factsheet for Bra023503.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

nucleus 1
mitochondrion 2
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85565	Canola	plasma membrane	53.77	88.67
Bra008722.1-P	Field mustard	golgi, plasma membrane, vacuole	45.73	80.06
AT5G15100.1	Thale cress	plasma membrane	43.22	70.3
PGSC0003DMT400003569	Potato	plasma membrane	22.78	52.31
VIT_14s0108g00020.t01	Wine grape	endoplasmic reticulum, plasma membrane	29.65	49.58
Solyc02g087660.2.1	Tomato	plasma membrane	29.15	48.74
TraesCS3A01G243700.1	Wheat	plasma membrane	28.48	47.62
HORVU3Hr1G067670.3	Barley	plasma membrane	28.31	47.34
TraesCS3D01G247700.1	Wheat	plasma membrane	28.14	47.06
TraesCS3B01G276500.1	Wheat	plasma membrane	28.14	47.06
KRH40132	Soybean	plasma membrane	27.97	46.65
EES03524	Sorghum	plasma membrane	27.97	46.13
KRH01128	Soybean	plasma membrane	27.3	45.4
Zm00001d043660_P001	Maize	plasma membrane	27.3	45.03
KRH58174	Soybean	endoplasmic reticulum, plasma membrane	27.3	45.03
KRH04363	Soybean	endoplasmic reticulum, plasma membrane	26.97	44.35
Os01t0715600-00	Rice	peroxisome, plasma membrane, plastid	27.97	34.65
Bra008615.1-P	Field mustard	golgi, plasma membrane, vacuole	18.09	31.03
Bra012358.1-P	Field mustard	golgi, plasma membrane	26.13	25.87
Bra016366.1-P	Field mustard	golgi, plasma membrane	25.13	25.68
Bra015694.1-P	Field mustard	plasma membrane	23.28	24.22
Bra002763.1-P	Field mustard	plasma membrane	24.12	24.2
Bra015983.1-P	Field mustard	plasma membrane	24.29	23.46
Bra008105.1-P	Field mustard	golgi, plasma membrane	24.12	23.38
Bra006834.1-P	Field mustard	plasma membrane	24.62	22.9
Bra003938.1-P	Field mustard	golgi, plasma membrane	19.77	21.61
Bra035648.1-P	Field mustard	plasma membrane	23.62	21.33
Bra016173.1-P	Field mustard	plasma membrane	21.94	20.73
Bra026669.1-P	Field mustard	golgi, plasma membrane	25.29	18.95

Protein Annotations

MapMan:11.2.4.1.1	Gene3D:2.40.160.10	MapMan:24.2.5.2.1	MapMan:24.4.1	EnsemblPlantsGene:Bra023503	EnsemblPlants:Bra023503.1
EnsemblPlants:Bra023503.1-P	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0008308
GO:GO:0015698	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	GO:GO:0098656	InterPro:IPR023614
UniProt:M4E400	InterPro:Mem_trans	PFAM:PF01459	PFAM:PF03547	ScanProsite:PS00558	PANTHER:PTHR11743
PANTHER:PTHR11743:SF31	InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	TMHMM:TMhelix	UniParc:UPI00025435E8
SEG:seg	:	:	:	:	:

Description

AT5G15100 (E=2e-127) PIN8 | PIN8 (PIN-FORMED 8); auxin:hydrogen symporter/ transporter

Coordinates

chrA02:-:3652017..3656472

Molecular Weight (calculated)

64904.3 Da

IEP (calculated)

9.289

GRAVY (calculated)

0.293

Length

597 amino acids

Sequence
(BLAST)

001: MVSWLDVYNV FSATVPLYVS MILGYLSTKH LNLFSLEQCV GINKFIAKFS IPLLSFQVIS QNNPFTMSLR LILSDILQKI LAAVVFAVVI RFWHPTGGGG
101: KLGWIITGLS VTVFPNTLII GIPILSAIDG DAAKNILVQI VVLQCLIWSN ILLFLFEINA TWDLQSSGAS IEHRVNDNEE TDIDQEPIEE EAIVRTRSSG
201: TGKIILKAWR KFIVNPNTYA AMIGLIWATL HFRLGWKLPE MIDKSIHLIS DGGLGMAMFS LGLFMASQSS IIACGTKMSI ITMILKFILG PALMIASAFC
301: IRLRGTLFRV TILQLVPKKT IMVKGPGLYT EIGKKARDLL YKDYQGDQKL SVTTYSSTGV AITTTGTNKG DLFVGDVTTQ VKNKNFTADI KVATDSSLLT
401: TFTYDEATPG LKAIVSAKVP DQKSGKVELQ YLHDYAGICT SVGLTASPIV NFSGVVGNNV LALGTDVSFN TQSGDFKQFN AGFSFTKDDL IAALTLNDKG
501: DKLNASYYHI VNPLSNTVVG AEVTHSFTTQ KNAITVGAQH ALDPLTTLKA RVNNDGVANA LIQHQWRPKS FITVSGEVNS RAIEKGAKVG FALALKP

Best Arabidopsis Sequence Match ( AT5G15100.1 )
(BLAST)

001: MISWLDIYHV VSATVPLYVS MTLGFLSARH LKLFSPEQCA GINKFVAKFS IPLLSFQIIS ENNPFKMSPK LILSDILQKF LVVVVLAMVL RFWHPTGGRG
101: GKLGWVITGL SISVLPNTLI LGMPILSAIY GDEAASILEQ IVVLQSLIWY TILLFLFELN AARALPSSGA SLEHTGNDQE EANIEDEPKE EEDEEEVAIV
201: RTRSVGTMKI LLKAWRKLII NPNTYATLIG IIWATLHFRL GWNLPEMIDK SIHLLSDGGL GMAMFSLGLF MASQSSIIAC GTKMAIITML LKFVLGPALM
301: IASAYCIRLK STLFKVAILQ AALPQGVVPF VFAKEYNLHP EIISTGVIFG MLIALPTTLA YYFLLDL

Arabidopsis Description

PIN8Auxin efflux carrier component 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFP6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.