Factsheet for Bra006834.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005403.1-P
Bra009166.1-P
Bra010996.1-P
Bra012474.1-P
Bra017216.1-P
Bra021925.1-P
Bra023087.1-P
Bra024741.1-P
Bra025359.1-P
Bra027824.1-P
Bra035030.1-P
Bra039042.1-P
Bra039992.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57090.1	Bra010996.1-P	AT1G25490.1	17889649
AT5G57090.1	Bra012474.1-P	AT1G25490.1	17889649
AT5G57090.1	Bra024741.1-P	AT1G25490.1	17889649
AT5G57090.1	Bra035030.1-P	AT1G25490.1	17889649
AT5G57090.1	Bra039992.1-P	AT1G25490.1	17889649
AT5G57090.1	Bra027824.1-P	AT1G59980.1	18047472
AT5G57090.1	Bra005403.1-P	AT2G34650.1	17889649
AT5G57090.1	Bra021925.1-P	AT2G34650.1	17889649
AT5G57090.1	Bra017216.1-P	AT2G36910.1	17237354
AT5G57090.1	Bra023087.1-P	AT2G36910.1	17237354
AT5G57090.1	Bra025359.1-P	AT3G28860.1	17237354
AT5G57090.1	Bra039042.1-P	AT3G28860.1	17237354
AT5G57090.1	Bra009166.1-P	AT5G06140.1	16936718

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11886	Canola	plasma membrane	92.37	95.8
CDX88606	Canola	plasma membrane	94.86	94.71
AT5G57090.1	Thale cress	golgi, plasma membrane, vacuole	92.37	91.65
Bra035648.1-P	Field mustard	plasma membrane	93.77	91.07
Bra002763.1-P	Field mustard	plasma membrane	72.74	78.49
KRH02749	Soybean	plasma membrane	77.41	78.02
KRH19119	Soybean	endoplasmic reticulum	77.57	77.57
VIT_11s0052g00440.t01	Wine grape	plasma membrane	73.05	74.44
Solyc07g006900.1.1	Tomato	plasma membrane	72.12	73.38
GSMUA_Achr1P15720_001	Banana	plasma membrane	58.26	72.9
PGSC0003DMT400048251	Potato	plasma membrane	71.65	72.9
EER88769	Sorghum	plasma membrane	64.64	66.29
TraesCS7B01G398100.1	Wheat	golgi, plasma membrane, vacuole	64.95	65.98
TraesCS7A01G492400.1	Wheat	golgi, plasma membrane, vacuole	64.95	65.98
TraesCS7D01G478800.1	Wheat	golgi, plasma membrane, vacuole	64.95	65.88
Os06t0660200-01	Rice	plasma membrane	64.64	65.87
HORVU7Hr1G110470.7	Barley	golgi, plasma membrane, vacuole	64.95	65.77
Zm00001d046893_P001	Maize	golgi, plasma membrane, vacuole	64.33	64.94
Bra012358.1-P	Field mustard	golgi, plasma membrane	56.85	60.53
Bra008105.1-P	Field mustard	golgi, plasma membrane	57.94	60.39
Bra015983.1-P	Field mustard	plasma membrane	57.94	60.19
Bra016366.1-P	Field mustard	golgi, plasma membrane	51.71	56.85
Bra003938.1-P	Field mustard	golgi, plasma membrane	47.2	55.49
Bra016173.1-P	Field mustard	plasma membrane	51.25	52.06
Bra008615.1-P	Field mustard	golgi, plasma membrane, vacuole	26.64	49.14
Bra008722.1-P	Field mustard	golgi, plasma membrane, vacuole	26.01	48.97
Bra015694.1-P	Field mustard	plasma membrane	43.15	48.26
Bra026669.1-P	Field mustard	golgi, plasma membrane	54.98	44.29
Bra023503.1-P	Field mustard	golgi, plasma membrane	22.9	24.62

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	EnsemblPlantsGene:Bra006834	EnsemblPlants:Bra006834.1	EnsemblPlants:Bra006834.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	GO:GO:0010315
GO:GO:0010329	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	UniProt:M4CRJ3	InterPro:Mem_trans
PFAM:PF03547	InterPro:PIN2	PANTHER:PTHR31752	PANTHER:PTHR31752:SF4	TIGRFAMs:TIGR00946	TMHMM:TMhelix
UniParc:UPI000253FD0A	SEG:seg	:	:	:	:

Description

AT5G57090 (E=2e-314) EIR1, WAV6, ATPIN2, PIN2, AGR, AGR1 | EIR1 (ETHYLENE INSENSITIVE ROOT 1); auxin efflux transmembrane transporter/ auxin:hydrogen symporter/ transporter

Coordinates

chrA03:-:5266421..5270315

Molecular Weight (calculated)

68913.2 Da

IEP (calculated)

9.575

GRAVY (calculated)

0.027

Length

642 amino acids

Sequence
(BLAST)

001: MITGKDMYDV LAAMVPLYVA MMLAYGSVRW WGIFTPDQCS GINRFVAVFA VPLLSFHFIS SNDPYAMDYQ FLAADSLQKV AFSRRGSLEW MITLFSLSTL
101: PNTLVMGIPL LRAMYGDFSG NLMVQIVVLQ SIIWYTLMLF LFEFRGAKLL ISEQFPETAG SITSFRVDSD VLSLNGREPL ETDAEIGDDG KLHVVVRRSS
201: AASSMISSFN KSHGGGLNSS MITPRASNLT GVEIYSVQSS REPTPRASSF NQTDFYAMFN ASKAPSPRHG YTNSYGGPGS GPGGDVYSLQ SSKGVTPRTS
301: NFDEEALKNA KKGGRGAKSM SGELYNNNTV PSYPPPNPMF KGSTSGASGV KKKESVSGGG GSGGGGEQNK EMNMFVWSSS ASPVSEAHAR NAITRGASTD
401: SSTDPKAYLP PHENLASKAM HNLIENMTPG RKAHVEMDQE GNNEGKSGVH SSPYNGKKGS DVEDGGPGGP RKQQMPPASV MTRLILIMVW RKLIRNPNTY
501: SSLFGLAWSL ISFKWNIKMP TIMSGSISIL SDAGLGMAMF SLGLFMALQP KIIACGKSVA VFAMAVRFLT GPAVIAATSI AIGLRGSLLH VAIVQAALPQ
601: GIVPFVFAKE YNVHPDILST AVIFGMLVAL PVTVLYYVLL GI

Best Arabidopsis Sequence Match ( AT5G57090.1 )
(BLAST)

001: MITGKDMYDV LAAMVPLYVA MILAYGSVRW WGIFTPDQCS GINRFVAVFA VPLLSFHFIS SNDPYAMNYH FLAADSLQKV VILAALFLWQ AFSRRGSLEW
101: MITLFSLSTL PNTLVMGIPL LRAMYGDFSG NLMVQIVVLQ SIIWYTLMLF LFEFRGAKLL ISEQFPETAG SITSFRVDSD VISLNGREPL QTDAEIGDDG
201: KLHVVVRRSS AASSMISSFN KSHGGGLNSS MITPRASNLT GVEIYSVQSS REPTPRASSF NQTDFYAMFN ASKAPSPRHG YTNSYGGAGA GPGGDVYSLQ
301: SSKGVTPRTS NFDEEVMKTA KKAGRGGRSM SGELYNNNSV PSYPPPNPMF TGSTSGASGV KKKESGGGGS GGGVGVGGQN KEMNMFVWSS SASPVSEANA
401: KNAMTRGSST DVSTDPKVSI PPHDNLATKA MQNLIENMSP GRKGHVEMDQ DGNNGGKSPY MGKKGSDVED GGPGPRKQQM PPASVMTRLI LIMVWRKLIR
501: NPNTYSSLFG LAWSLVSFKW NIKMPTIMSG SISILSDAGL GMAMFSLGLF MALQPKIIAC GKSVAGFAMA VRFLTGPAVI AATSIAIGIR GDLLHIAIVQ
601: AALPQGIVPF VFAKEYNVHP DILSTAVIFG MLVALPVTVL YYVLLGL

Arabidopsis Description

PIN2Auxin efflux carrier component 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU77]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.