Factsheet for Bra012474.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002763.1-P
Bra003346.1-P
Bra006834.1-P
Bra007407.1-P
Bra008105.1-P
Bra014874.1-P
Bra015983.1-P
Bra020012.1-P
Bra024329.1-P
Bra026114.1-P
Bra028713.1-P
Bra032371.1-P
Bra033870.1-P
Bra035648.1-P
Bra037327.1-P
Bra037797.1-P
Bra039379.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25490.1	Bra026114.1-P	AT1G15730.1	21798944
AT1G25490.1	Bra014874.1-P	AT1G30260.1	21798944
AT1G25490.1	Bra032371.1-P	AT1G30260.1	21798944
AT1G25490.1	Bra033870.1-P	AT1G31870.1	21798944
AT1G25490.1	Bra008105.1-P	AT1G73590.1	17889649
AT1G25490.1	Bra015983.1-P	AT1G73590.1	17889649
AT1G25490.1	Bra039379.1-P	AT3G13222.1	21798944
AT1G25490.1	Bra003346.1-P	AT3G58630.1	21798944
AT1G25490.1	Bra007407.1-P	AT3G58630.1	21798944
AT1G25490.1	Bra020012.1-P	AT4G00231.1	21798944
AT1G25490.1	Bra037327.1-P	AT4G00231.1	21798944
AT1G25490.1	Bra028713.1-P	AT5G06960.1	21798944
AT1G25490.1	Bra002763.1-P	AT5G57090.1	17889649
AT1G25490.1	Bra006834.1-P	AT5G57090.1	17889649
AT1G25490.1	Bra035648.1-P	AT5G57090.1	17889649
AT1G25490.1	Bra024329.1-P	AT5G64813.1	21798944
AT1G25490.1	Bra037797.1-P	AT5G64813.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51132	Canola	cytosol	99.32	99.32
Bra010996.1-P	Field mustard	cytosol	94.71	94.39
AT1G25490.1	Thale cress	cytosol	93.17	92.86
Bra024741.1-P	Field mustard	cytosol	51.54	91.79
Bra039992.1-P	Field mustard	cytosol	19.62	86.47
Bra017348.1-P	Field mustard	cytosol	35.49	80.31
Bra035030.1-P	Field mustard	cytosol	19.45	73.08
Bra025162.1-P	Field mustard	cytosol	56.31	42.86

Protein Annotations

EnsemblPlants:Bra012474.1	EnsemblPlants:Bra012474.1-P	EnsemblPlantsGene:Bra012474	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:HEAT	InterPro:HEAT_type_2	InterPro:IPR011989
InterPro:IPR021133	PANTHER:PTHR10648	PANTHER:PTHR10648:SF20	PFAM:PF02985	PFAM:PF13646	PFscan:PS50077
SUPFAM:SSF48371	UniParc:UPI0002541251	UniProt:M4D7L4	MapMan:13.4.1.2.4	MapMan:18.4.24.1.2.1	:

Description

AT1G25490 (E=0.0) RCN1, REGA, ATB BETA BETA, EER1 | RCN1 (ROOTS CURL IN NPA); protein phosphatase type 2A regulator

Coordinates

chrA07:+:7350241..7353231

Molecular Weight (calculated)

65153.4 Da

IEP (calculated)

4.647

GRAVY (calculated)

0.136

Length

586 amino acids

Sequence
(BLAST)

001: MAMVDEPLYP IAVLIDELKN DDIQLRLNSI RRLSTIARAL GEERTRKELI PFLSENSDDD DEVLLAMAGE LGVFIPFVGG VEHAHVLLPP LESLCTVEET
101: CVREKAVDSL CKIGSEMRES DLVDSFVPLV KRLAAGEWFA ARVSACGLFH VAYQGCTDVL KTELRSIYNQ LCQDDMPMVR RAAATNLGKF ATTLESSYLN
201: AEIMTMFDDL TKDEQDSVRL LAVEGCAALG KLLEPQDCVA RVLPVIVNFS QDKSWRVRYM VANQLYELCE AVGPDCTKTD LVPAYVRLLQ DNEAEVRIAA
301: AGKVTKFCQL LNPELSIQHI LPCVKDLSSD SSQHVRSALA SVIMGMAPIL GKDSTIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDRLSQSLLP
401: AIVELAEDRH WRVRLAIIEY VPLLASQLGI GFFDDKLGAL CMQWLQDKVY SIREAGANNL KRLAEEFGSE WAMQHLVPQV LEMVNNPHYL HRMMALRAIS
501: LMAPVMGSEI TCSKFLPVVV EASKDIVPNI KFNVAKLMQS LIPIVDQSVV DKTIRQCLVD LSEDPDVDVR YFANQALQSI NGAAVA

Best Arabidopsis Sequence Match ( AT1G25490.1 )
(BLAST)

001: MAMVDEPLYP IAVLIDELKN DDIQLRLNSI RRLSTIARAL GEERTRKELI PFLSENSDDD DEVLLAMAEE LGVFIPFVGG IEFAHVLLPP LESLCTVEET
101: CVREKAVESL CKIGSQMKEN DLVESFVPLV KRLAGGEWFA ARVSACGIFH VAYQGCTDVL KTELRATYSQ LCKDDMPMVR RAAASNLGKF ATTVESTFLI
201: AEIMTMFDDL TKDDQDSVRL LAVEGCAALG KLLEPQDCVA RILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPDCTRTD LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFCRL LNPELAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPIL GKDSTIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY VPLLASQLGI GFFDDKLGAL CMQWLQDKVY SIREAAANNL KRLAEEFGPE WAMQHLVPQV LDMVNNPHYL HRMMVLRAIS
501: LMAPVMGSEI TCSKFLPVVV EASKDRVPNI KFNVAKLLQS LIPIVDQSVV DKTIRQCLVD LSEDPDVDVR YFANQALNSI DGSTAAQS

Arabidopsis Description

PP2AA1Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38845]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.