Factsheet for Bra037797.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003346.1-P
Bra007407.1-P
Bra018049.1-P
Bra029904.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64813.1	Bra018049.1-P	AT3G48550.1	21798944
AT5G64813.1	Bra029904.1-P	AT3G48550.1	21798944
AT5G64813.1	Bra003346.1-P	AT3G58630.1	21798944
AT5G64813.1	Bra007407.1-P	AT3G58630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18693	Canola	cytosol	97.37	97.37
AT5G64813.1	Thale cress	cytosol	91.52	91.52
Bra024329.1-P	Field mustard	cytosol	92.4	84.72
KRH59455	Soybean	cytosol	74.56	75.89
KRH43322	Soybean	cytosol	73.68	75.68
Solyc04g051700.2.1	Tomato	cytosol	71.64	73.57
PGSC0003DMT400080131	Potato	cytosol	71.34	73.05
VIT_07s0031g01700.t01	Wine grape	cytosol	71.05	72.32
GSMUA_Achr2P16850_001	Banana	cytosol	69.59	70.62
GSMUA_Achr10P...	Banana	cytosol	68.71	70.36
VIT_18s0001g02170.t01	Wine grape	cytosol	68.13	69.55
EER91775	Sorghum	cytosol	64.62	65.19
Os10t0135200-01	Rice	cytosol	65.2	65.01
GSMUA_Achr6P00810_001	Banana	cytosol	64.04	64.79
TraesCS1D01G166300.1	Wheat	cytosol	63.16	64.09
TraesCS1B01G205000.1	Wheat	cytosol	61.99	62.91
HORVU1Hr1G045310.7	Barley	cytosol	61.7	62.61
Zm00001d047945_P002	Maize	cytosol, plastid	60.53	61.06
EER95186	Sorghum	cytosol, plastid	59.94	60.47
Os03t0242200-01	Rice	cytosol	59.65	60.35
TraesCS4A01G071800.1	Wheat	cytosol, plastid	57.6	58.11
TraesCS4B01G227700.1	Wheat	cytosol	57.89	57.39
TraesCS4D01G228600.2	Wheat	cytosol	57.6	57.1
TraesCS1A01G172300.2	Wheat	cytosol	60.53	55.05
HORVU4Hr1G063900.7	Barley	cytosol	57.31	53.26
Zm00001d014330_P014	Maize	plastid	59.94	47.45
KRH04620	Soybean	extracellular	14.33	45.79

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra037797	EnsemblPlants:Bra037797.1	EnsemblPlants:Bra037797.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4F9N4	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	ScanProsite:PS00675	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF492	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	InterPro:Sigma_54_int_dom_ATP-bd_1
InterPro:Small_GTPase	UniParc:UPI0002541B31	SEG:seg	:	:	:

Description

AT5G64813 (E=8e-160) LIP1 | LIP1 (Light Insensitive Period1); GTPase

Coordinates

chrA09:+:3631942..3633430

Molecular Weight (calculated)

37684.2 Da

IEP (calculated)

9.040

GRAVY (calculated)

-0.543

Length

342 amino acids

Sequence
(BLAST)

001: MRFWRERERE SKEQILAPLC GQVRVLVVGD SGVGKTSLVQ LINKGCSIQR PSQTIGCTVG VKHITYGSPG SSSSSIQGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGGPG GLPVPYIVVG NKADIAAKEG TKGSSGNLVD AARHWVEKQG LLSSSEDLPL
201: FESFPGNAGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE QPAASPWSIP TSSSQRLDEI TSDEDQLYKR TSFHGDPYKY NNTLPPLAAQ RNLTSPPHTL
301: YPQQQQPVST PDSYAVPRFS LSSLQDTSNN GSGRSKRMDI NV

Best Arabidopsis Sequence Match ( AT5G64813.1 )
(BLAST)

001: MKFWRERERE NKEQILAPLC GQVRVLVVGD SGVGKTSLVH LINKGSSIVR PPQTIGCTVG VKHITYGSPA SSSSSIQGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGPGG LPVPYIVVGN KADIAAKEGT KGSSGNLVDA ARHWVEKQGL LPSSSEDLPL
201: FESFPGNGGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPAASPWSIS PVPTSSSQRL DEITSDDDQF YKRTSFHGDP YKYNNTIPPL PAQRNLTPPP
301: TLYPQQPVST PDNYTIPRYS LSSVQETTNN GSARSKRMDI NV

Arabidopsis Description

LIP1Small GTPase LIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.