Factsheet for HORVU4Hr1G063900.7

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G061870.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64813.1	HORVU3Hr1G061870.1	AT3G58630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G071800.1	Wheat	cytosol, plastid	88.32	95.87
TraesCS4B01G227700.1	Wheat	cytosol	88.59	94.49
TraesCS4D01G228600.2	Wheat	cytosol	88.04	93.91
EER95186	Sorghum	cytosol, plastid	75.27	81.71
Zm00001d047945_P002	Maize	cytosol, plastid	75.0	81.42
Os03t0242200-01	Rice	cytosol	73.91	80.47
HORVU1Hr1G045310.7	Barley	cytosol	63.32	69.14
GSMUA_Achr2P16850_001	Banana	cytosol	56.79	62.02
GSMUA_Achr10P...	Banana	cytosol	56.25	61.98
PGSC0003DMT400080131	Potato	cytosol	54.89	60.48
Solyc04g051700.2.1	Tomato	cytosol	54.62	60.36
KRH59455	Soybean	cytosol	54.89	60.12
KRH43322	Soybean	cytosol	54.35	60.06
VIT_18s0001g02170.t01	Wine grape	cytosol	54.35	59.7
GSMUA_Achr6P00810_001	Banana	cytosol	54.35	59.17
VIT_07s0031g01700.t01	Wine grape	cytosol	53.8	58.93
AT5G64813.1	Thale cress	cytosol	54.08	58.19
CDX81260	Canola	cytosol	53.26	57.31
Bra037797.1-P	Field mustard	cytosol	53.26	57.31
CDY18693	Canola	cytosol	52.99	57.02
AT5G09910.1	Thale cress	cytosol	51.36	56.76
CDY14513	Canola	plasma membrane	55.43	55.28
Bra024329.1-P	Field mustard	cytosol	55.43	54.69
CDY08848	Canola	cytosol	55.16	54.57
KRH04620	Soybean	extracellular	10.6	36.45

Protein Annotations

MapMan:35.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:HORVU4Hr1G063900	EnsemblPlants:HORVU4Hr1G063900.7	UniProt:M0VR10	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	ScanProsite:PS00675	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF492
SMART:SM00175	SUPFAM:SSF52540	InterPro:Sigma_54_int_dom_ATP-bd_1	InterPro:Small_GTPase	UniParc:UPI0002969BA1	SEG:seg

Description

No Description!

Coordinates

chrchr4H:-:535407097..535410750

Molecular Weight (calculated)

40477.0 Da

IEP (calculated)

9.309

GRAVY (calculated)

-0.273

Length

368 amino acids

Sequence
(BLAST)

001: MFWKDSSGRS SSSSGREQQS GVGPFGQVRV LVVGDSGVGK SSLVHLILEG SAIARPAQTV GCVVGIKVGA LALCFPSLYH LHFFSPLTLS LLLFQHVTCG
101: SAGGSSNNIS NDAERNFFVE LWDVSGHDRY KACRSIFYTQ INGVIFVYDL SQRKTKTNLN KWAVEVAETG TFSAILGSGG PGGLPVPYLV IANKVDIVPS
201: DGTRVRSGSI IDVARQWIEK RGLLPRSEEL PLTESFPGNS GLISAAKEAR YDKEAVTKFF RMLIRRRYFS NEPPAPSPWS LTPREDNILP VVTRKDDTDS
301: FQRKSYSGED FMFNGVPPLP AQRNLPPPPT LDPQLPVFSS DNNRYHRFSS PSLTEISNNR TSRENFNV

Best Arabidopsis Sequence Match ( AT5G64813.1 )
(BLAST)

001: MKFWRERERE NKEQILAPLC GQVRVLVVGD SGVGKTSLVH LINKGSSIVR PPQTIGCTVG VKHITYGSPA SSSSSIQGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGPGG LPVPYIVVGN KADIAAKEGT KGSSGNLVDA ARHWVEKQGL LPSSSEDLPL
201: FESFPGNGGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPAASPWSIS PVPTSSSQRL DEITSDDDQF YKRTSFHGDP YKYNNTIPPL PAQRNLTPPP
301: TLYPQQPVST PDNYTIPRYS LSSVQETTNN GSARSKRMDI NV

Arabidopsis Description

LIP1Small GTPase LIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.