Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18693 | Canola | cytosol | 92.11 | 92.11 |
| Bra037797.1-P | Field mustard | cytosol | 91.52 | 91.52 |
| CDX81260 | Canola | cytosol | 90.94 | 90.94 |
| CDY14513 | Canola | plasma membrane | 94.44 | 87.53 |
| Bra024329.1-P | Field mustard | cytosol | 94.74 | 86.86 |
| CDY08848 | Canola | cytosol | 93.86 | 86.29 |
| AT5G09910.1 | Thale cress | cytosol | 77.78 | 79.88 |
| KRH59455 | Soybean | cytosol | 76.32 | 77.68 |
| KRH43322 | Soybean | cytosol | 75.44 | 77.48 |
| Solyc04g051700.2.1 | Tomato | cytosol | 74.85 | 76.88 |
| PGSC0003DMT400080131 | Potato | cytosol | 74.56 | 76.35 |
| VIT_07s0031g01700.t01 | Wine grape | cytosol | 74.27 | 75.6 |
| GSMUA_Achr10P... | Banana | cytosol | 70.76 | 72.46 |
| VIT_18s0001g02170.t01 | Wine grape | cytosol | 70.76 | 72.24 |
| GSMUA_Achr2P16850_001 | Banana | cytosol | 69.88 | 70.92 |
| EER91775 | Sorghum | cytosol | 66.08 | 66.67 |
| GSMUA_Achr6P00810_001 | Banana | cytosol | 65.79 | 66.57 |
| Os10t0135200-01 | Rice | cytosol | 66.67 | 66.47 |
| TraesCS1D01G166300.1 | Wheat | cytosol | 62.87 | 63.8 |
| TraesCS1B01G205000.1 | Wheat | cytosol | 61.7 | 62.61 |
| HORVU1Hr1G045310.7 | Barley | cytosol | 61.7 | 62.61 |
| Os03t0242200-01 | Rice | cytosol | 60.53 | 61.24 |
| EER95186 | Sorghum | cytosol, plastid | 60.53 | 61.06 |
| Zm00001d047945_P002 | Maize | cytosol, plastid | 60.53 | 61.06 |
| TraesCS4A01G071800.1 | Wheat | cytosol, plastid | 58.48 | 59.0 |
| TraesCS4B01G227700.1 | Wheat | cytosol | 58.77 | 58.26 |
| TraesCS4D01G228600.2 | Wheat | cytosol | 58.48 | 57.97 |
| TraesCS1A01G172300.2 | Wheat | cytosol | 60.23 | 54.79 |
| HORVU4Hr1G063900.7 | Barley | cytosol | 58.19 | 54.08 |
| Zm00001d014330_P014 | Maize | plastid | 61.4 | 48.61 |
| KRH04620 | Soybean | extracellular | 14.33 | 45.79 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:836603 | ProteinID:AED97954.1 | EMBL:AF360203 | ProteinID:ANM70069.1 |
| ProteinID:ANM70070.1 | ArrayExpress:AT5G64813 | EnsemblPlantsGene:AT5G64813 | RefSeq:AT5G64813 | TAIR:AT5G64813 | RefSeq:AT5G64813-TAIR-G |
| EnsemblPlants:AT5G64813.1 | TAIR:AT5G64813.1 | EMBL:AY040050 | Unigene:At.19012 | ProteinID:BAA97293.1 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009628 | GO:GO:0009640 | GO:GO:0009791 | GO:GO:0016787 | GO:GO:0032922 |
| Symbol:LIP1 | RefSeq:NP_001318878.1 | RefSeq:NP_001331706.1 | RefSeq:NP_568996.1 | InterPro:P-loop_NTPase | PFAM:PF00071 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00449 | ScanProsite:PS00675 | PFscan:PS51419 | PANTHER:PTHR24073 |
| PANTHER:PTHR24073:SF492 | UniProt:Q9C5J9 | SMART:SM00175 | SUPFAM:SSF52540 | InterPro:Sigma_54_int_dom_ATP-bd_1 | InterPro:Small_GTPase |
| UniParc:UPI00000A9B08 | SEG:seg | : | : | : | : |
Description
LIP1Small GTPase LIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J9]
Coordinates
chr5:+:25910015..25912896
Molecular Weight (calculated)
37743.4 Da
IEP (calculated)
9.184
GRAVY (calculated)
-0.517
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MKFWRERERE NKEQILAPLC GQVRVLVVGD SGVGKTSLVH LINKGSSIVR PPQTIGCTVG VKHITYGSPA SSSSSIQGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGPGG LPVPYIVVGN KADIAAKEGT KGSSGNLVDA ARHWVEKQGL LPSSSEDLPL
201: FESFPGNGGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPAASPWSIS PVPTSSSQRL DEITSDDDQF YKRTSFHGDP YKYNNTIPPL PAQRNLTPPP
301: TLYPQQPVST PDNYTIPRYS LSSVQETTNN GSARSKRMDI NV
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGPGG LPVPYIVVGN KADIAAKEGT KGSSGNLVDA ARHWVEKQGL LPSSSEDLPL
201: FESFPGNGGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPAASPWSIS PVPTSSSQRL DEITSDDDQF YKRTSFHGDP YKYNNTIPPL PAQRNLTPPP
301: TLYPQQPVST PDNYTIPRYS LSSVQETTNN GSARSKRMDI NV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.