Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G64813.1 | KRH03966 | AT3G48550.1 | 21798944 |
| AT5G64813.1 | KRH57236 | AT3G48550.1 | 21798944 |
| AT5G64813.1 | KRH22283 | AT3G58630.1 | 21798944 |
| AT5G64813.1 | KRH27047 | AT3G58630.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH43322 | Soybean | cytosol | 96.73 | 97.6 |
| VIT_07s0031g01700.t01 | Wine grape | cytosol | 80.06 | 80.06 |
| AT5G64813.1 | Thale cress | cytosol | 77.68 | 76.32 |
| Solyc04g051700.2.1 | Tomato | cytosol | 75.6 | 76.28 |
| PGSC0003DMT400080131 | Potato | cytosol | 75.3 | 75.75 |
| Bra037797.1-P | Field mustard | cytosol | 75.89 | 74.56 |
| CDY18693 | Canola | cytosol | 75.89 | 74.56 |
| CDX81260 | Canola | cytosol | 75.6 | 74.27 |
| VIT_18s0001g02170.t01 | Wine grape | cytosol | 72.92 | 73.13 |
| GSMUA_Achr10P... | Banana | cytosol | 72.62 | 73.05 |
| GSMUA_Achr2P16850_001 | Banana | cytosol | 72.92 | 72.7 |
| AT5G09910.1 | Thale cress | cytosol | 70.83 | 71.47 |
| CDY14513 | Canola | plasma membrane | 76.79 | 69.92 |
| Bra024329.1-P | Field mustard | cytosol | 76.49 | 68.9 |
| GSMUA_Achr6P00810_001 | Banana | cytosol | 69.05 | 68.64 |
| CDY08848 | Canola | cytosol | 75.6 | 68.28 |
| KRH04620 | Soybean | extracellular | 21.73 | 68.22 |
| Os10t0135200-01 | Rice | cytosol | 68.45 | 67.06 |
| EER91775 | Sorghum | cytosol | 66.67 | 66.08 |
| TraesCS1D01G166300.1 | Wheat | cytosol | 64.88 | 64.69 |
| TraesCS1B01G205000.1 | Wheat | cytosol | 64.29 | 64.09 |
| HORVU1Hr1G045310.7 | Barley | cytosol | 63.69 | 63.5 |
| EER95186 | Sorghum | cytosol, plastid | 61.9 | 61.36 |
| Zm00001d047945_P002 | Maize | cytosol, plastid | 61.9 | 61.36 |
| Os03t0242200-01 | Rice | cytosol | 60.42 | 60.06 |
| TraesCS4A01G071800.1 | Wheat | cytosol, plastid | 59.82 | 59.29 |
| TraesCS4B01G227700.1 | Wheat | cytosol | 59.82 | 58.26 |
| TraesCS4D01G228600.2 | Wheat | cytosol | 59.82 | 58.26 |
| HORVU4Hr1G063900.7 | Barley | cytosol | 60.12 | 54.89 |
| TraesCS1A01G172300.2 | Wheat | cytosol | 60.71 | 54.26 |
| Zm00001d014330_P014 | Maize | plastid | 61.61 | 47.92 |
Protein Annotations
| EntrezGene:100808270 | Gene3D:3.40.50.300 | MapMan:35.1 | EMBL:ACUP02003324 | EnsemblPlantsGene:GLYMA_05G184400 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 |
| UniProt:I1K4R4 | EnsemblPlants:KRH59455 | ProteinID:KRH59455 | ProteinID:KRH59455.1 | InterPro:P-loop_NTPase | PFAM:PF00071 |
| PRINTS:PR00449 | ScanProsite:PS00675 | PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF492 | SMART:SM00175 |
| SUPFAM:SSF52540 | InterPro:Sigma_54_int_dom_ATP-bd_1 | InterPro:Small_GTPase | UniParc:UPI0002339F7C | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr5:-:37135257..37140497
Molecular Weight (calculated)
36978.6 Da
IEP (calculated)
8.425
GRAVY (calculated)
-0.415
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MFWRDREREN KELNGGVLCG LVRVLVVGDS GVGKTSLVNL IVKGSPIARP PQTIGCSVDV KHITYGNSGS SSSSLKGDSE RDFFVELWDV SGHERYKDCR
101: SLFYSQINGV IFVHDLSQRR TKTSLQKWAA EIAATGTFSA PLGSGGPGGL PVPYIFIGNK ADIAAKEGTR GSSGNLVDVA RQWVEKQGLL PSSEELPLTE
201: SFPGNGGLIA AAKEARHDKE AVVKFFRMLI RRRYFSDEIQ IPSPAWSIPS VQRQAQRIDE NFTEDDQSYD TSLSSDPYKY NMLPPLPAQR NLTPPPTLYP
301: QQPVSVSENY SFPRFSLSGS SEISTVARTK RSDINV
101: SLFYSQINGV IFVHDLSQRR TKTSLQKWAA EIAATGTFSA PLGSGGPGGL PVPYIFIGNK ADIAAKEGTR GSSGNLVDVA RQWVEKQGLL PSSEELPLTE
201: SFPGNGGLIA AAKEARHDKE AVVKFFRMLI RRRYFSDEIQ IPSPAWSIPS VQRQAQRIDE NFTEDDQSYD TSLSSDPYKY NMLPPLPAQR NLTPPPTLYP
301: QQPVSVSENY SFPRFSLSGS SEISTVARTK RSDINV
001: MKFWRERERE NKEQILAPLC GQVRVLVVGD SGVGKTSLVH LINKGSSIVR PPQTIGCTVG VKHITYGSPA SSSSSIQGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGPGG LPVPYIVVGN KADIAAKEGT KGSSGNLVDA ARHWVEKQGL LPSSSEDLPL
201: FESFPGNGGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPAASPWSIS PVPTSSSQRL DEITSDDDQF YKRTSFHGDP YKYNNTIPPL PAQRNLTPPP
301: TLYPQQPVST PDNYTIPRYS LSSVQETTNN GSARSKRMDI NV
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGPGG LPVPYIVVGN KADIAAKEGT KGSSGNLVDA ARHWVEKQGL LPSSSEDLPL
201: FESFPGNGGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPAASPWSIS PVPTSSSQRL DEITSDDDQF YKRTSFHGDP YKYNNTIPPL PAQRNLTPPP
301: TLYPQQPVST PDNYTIPRYS LSSVQETTNN GSARSKRMDI NV
Arabidopsis Description
LIP1Small GTPase LIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.