Factsheet for GSMUA_Achr10P28230_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P11500_001
GSMUA_Achr1P27460_001
GSMUA_Achr5P09160_001
GSMUA_Achr6P06410_001
GSMUA_Achr6P20920_001
GSMUA_Achr6P26840_001
GSMUA_Achr9P06410_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64813.1	GSMUA_Achr6P06410_001	AT3G48550.1	21798944
AT5G64813.1	GSMUA_Achr6P20920_001	AT3G48550.1	21798944
AT5G64813.1	GSMUA_Achr1P11500_001	AT3G58630.1	21798944
AT5G64813.1	GSMUA_Achr1P27460_001	AT3G58630.1	21798944
AT5G64813.1	GSMUA_Achr5P09160_001	AT3G58630.1	21798944
AT5G64813.1	GSMUA_Achr6P26840_001	AT3G58630.1	21798944
AT5G64813.1	GSMUA_Achr9P06410_001	AT3G58630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P16850_001	Banana	cytosol	83.53	82.79
GSMUA_Achr6P00810_001	Banana	cytosol	80.84	79.88
VIT_07s0031g01700.t01	Wine grape	cytosol	75.15	74.7
KRH59455	Soybean	cytosol	73.05	72.62
KRH43322	Soybean	cytosol	72.16	72.37
Solyc04g051700.2.1	Tomato	cytosol	70.96	71.17
AT5G64813.1	Thale cress	cytosol	72.46	70.76
PGSC0003DMT400080131	Potato	cytosol	70.66	70.66
EER91775	Sorghum	cytosol	70.96	69.91
CDY18693	Canola	cytosol	71.56	69.88
Os10t0135200-01	Rice	cytosol	70.66	68.8
Bra037797.1-P	Field mustard	cytosol	70.36	68.71
VIT_18s0001g02170.t01	Wine grape	cytosol	68.86	68.66
CDX81260	Canola	cytosol	70.06	68.42
TraesCS1D01G166300.1	Wheat	cytosol	68.26	67.66
AT5G09910.1	Thale cress	cytosol	67.07	67.27
TraesCS1B01G205000.1	Wheat	cytosol	67.07	66.47
CDY14513	Canola	plasma membrane	73.35	66.4
HORVU1Hr1G045310.7	Barley	cytosol	66.77	66.17
Bra024329.1-P	Field mustard	cytosol	73.05	65.42
CDY08848	Canola	cytosol	72.46	65.05
Zm00001d047945_P002	Maize	cytosol, plastid	65.57	64.6
Os03t0242200-01	Rice	cytosol	65.27	64.5
EER95186	Sorghum	cytosol, plastid	65.27	64.31
TraesCS4A01G071800.1	Wheat	cytosol, plastid	62.28	61.36
TraesCS4D01G228600.2	Wheat	cytosol	62.57	60.58
TraesCS4B01G227700.1	Wheat	cytosol	61.68	59.71
TraesCS1A01G172300.2	Wheat	cytosol	64.07	56.91
HORVU4Hr1G063900.7	Barley	cytosol	61.98	56.25
Zm00001d014330_P014	Maize	plastid	63.77	49.31
KRH04620	Soybean	extracellular	13.47	42.06

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr10G28230_001	EnsemblPlants:GSMUA_Achr10P28230_001	EnsemblPlants:GSMUA_Achr10T28230_001
UniProt:M0RM47	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF492	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI0002949D02	SEG:seg	:	:	:	:

Description

Uncharacterized GTP-binding protein At5g64813 [Source:GMGC_GENE;Acc:GSMUA_Achr10G28230_001]

Coordinates

chr10:+:31123356..31127966

Molecular Weight (calculated)

36551.9 Da

IEP (calculated)

9.253

GRAVY (calculated)

-0.485

Length

334 amino acids

Sequence
(BLAST)

001: MFWRERERDG DQNGGPPCGQ VRVLVVGDAG VGKTSLVHLI LKGSSIARPS QTVGCTVGVK HISYGSASSS SNSIKGDAQR DFFVELWDVS GHERYKDCRS
101: LFYTQINGVI FVHDLTQRRT KSNLQRWASE IATTGTFSTP LGSGGPGGLP VPYLVIGNKT DIAAKEGTRV SSGNLVDVAR QWVEKQGLLP SSEELPSTDS
201: FPRSSGLLAA AKEARYDKES VIKFFRVLIR RRYFSDELPS SSPWSMSPLP NSTHRTGESS SDEDQFHRRV SLSGEGYKYN VVPPLPAQLN LTPPPTLYPQ
301: LPMSASENYS FHRFSPSGSP EIGSTKPNRA DINV

Best Arabidopsis Sequence Match ( AT5G64813.1 )
(BLAST)

001: MKFWRERERE NKEQILAPLC GQVRVLVVGD SGVGKTSLVH LINKGSSIVR PPQTIGCTVG VKHITYGSPA SSSSSIQGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGPGG LPVPYIVVGN KADIAAKEGT KGSSGNLVDA ARHWVEKQGL LPSSSEDLPL
201: FESFPGNGGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPAASPWSIS PVPTSSSQRL DEITSDDDQF YKRTSFHGDP YKYNNTIPPL PAQRNLTPPP
301: TLYPQQPVST PDNYTIPRYS LSSVQETTNN GSARSKRMDI NV

Arabidopsis Description

LIP1Small GTPase LIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.