CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67755
CDX68463
CDX71939
CDX98311
CDY60454
CDY70544

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64813.1	CDX68463	AT3G48550.1	21798944
AT5G64813.1	CDY60454	AT3G48550.1	21798944
AT5G64813.1	CDY70544	AT3G48550.1	21798944
AT5G64813.1	CDX67755	AT3G58630.1	21798944
AT5G64813.1	CDX71939	AT3G58630.1	21798944
AT5G64813.1	CDX98311	AT3G58630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024329.1-P	Field mustard	cytosol	98.1	97.05
AT5G64813.1	Thale cress	cytosol	87.53	94.44
CDY08848	Canola	cytosol	94.31	93.55
CDY18693	Canola	cytosol	85.37	92.11
CDX81260	Canola	cytosol	85.09	91.81
KRH59455	Soybean	cytosol	69.92	76.79
KRH43322	Soybean	cytosol	68.83	76.28
Solyc04g051700.2.1	Tomato	cytosol	68.56	75.98
PGSC0003DMT400080131	Potato	cytosol	68.29	75.45
VIT_07s0031g01700.t01	Wine grape	cytosol	68.02	74.7
GSMUA_Achr10P...	Banana	cytosol	66.4	73.35
VIT_18s0001g02170.t01	Wine grape	cytosol	66.12	72.84
GSMUA_Achr2P16850_001	Banana	cytosol	65.85	72.11
EER91775	Sorghum	cytosol	62.06	67.55
GSMUA_Achr6P00810_001	Banana	cytosol	61.52	67.16
Os10t0135200-01	Rice	cytosol	62.06	66.76
TraesCS1D01G166300.1	Wheat	cytosol	59.08	64.69
HORVU1Hr1G045310.7	Barley	cytosol	57.99	63.5
TraesCS1B01G205000.1	Wheat	cytosol	57.99	63.5
Zm00001d047945_P002	Maize	cytosol, plastid	58.27	63.42
EER95186	Sorghum	cytosol, plastid	57.72	62.83
Os03t0242200-01	Rice	cytosol	56.64	61.83
TraesCS4A01G071800.1	Wheat	cytosol, plastid	55.56	60.47
TraesCS4D01G228600.2	Wheat	cytosol	55.56	59.42
TraesCS4B01G227700.1	Wheat	cytosol	55.28	59.13
TraesCS1A01G172300.2	Wheat	cytosol	56.91	55.85
HORVU4Hr1G063900.7	Barley	cytosol	55.28	55.43
Zm00001d014330_P014	Maize	plastid	57.45	49.07
KRH04620	Soybean	extracellular	13.28	45.79

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078FQB2	UniProt:A0A078FQB2	EnsemblPlants:CDY14513	ProteinID:CDY14513
ProteinID:CDY14513.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00079221001
InterPro:P-loop_NTPase	PFAM:PF00071	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF492	SMART:SM00175
SUPFAM:SSF52540	InterPro:Small_GTPase	TMHMM:TMhelix	UniParc:UPI0004EEE36B	SEG:seg	:

Description

BnaC03g49460DBnaC03g49460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQB2]

Coordinates

chrLK032044:+:100327..102926

Molecular Weight (calculated)

40957.4 Da

IEP (calculated)

8.804

GRAVY (calculated)

-0.424

Length

369 amino acids

Sequence
(BLAST)

001: MKFWRERERE SKEQILAPLC GQVRVLVVGD SVMAHVHVES WLLVYTIWTL MLYLIMCGSG VGKTSLVHLI NKGSSIHRPS QTIGCTVGVK HITYGSPASS
101: SSSIQGDAER DFFVELWDVS GHERYKDCRS LFYSQINGVI FVHDLSQRRT KTSLQKWASE VAATGTFSAP LPSGGPGGLP VPYIVVGNKA DIAAKEGTKG
201: SSGNLVDAAR HWVEKQGLLS SSEELPLFES FPGNSGLIAA AKETRYDKEA LNKFFRMLIR RRYFSDEQPA ASPWSISPHR TSSSQRLDDE ITSDDDQFYK
301: RTSLHGDPYK YNNNTLPPLP AQRNLTPPPT LFPQQPVSTP DNYAIPRFSL SSETSNNGSG RSKRMDINV

Best Arabidopsis Sequence Match ( AT5G64813.1 )
(BLAST)

001: MKFWRERERE NKEQILAPLC GQVRVLVVGD SGVGKTSLVH LINKGSSIVR PPQTIGCTVG VKHITYGSPA SSSSSIQGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGPGG LPVPYIVVGN KADIAAKEGT KGSSGNLVDA ARHWVEKQGL LPSSSEDLPL
201: FESFPGNGGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPAASPWSIS PVPTSSSQRL DEITSDDDQF YKRTSFHGDP YKYNNTIPPL PAQRNLTPPP
301: TLYPQQPVST PDNYTIPRYS LSSVQETTNN GSARSKRMDI NV

Arabidopsis Description

LIP1Small GTPase LIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.