Factsheet for TraesCS4D01G228600.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G392300.1
TraesCS1B01G420500.1
TraesCS1D01G400500.1
TraesCS2A01G282700.1
TraesCS2B01G300000.1
TraesCS2D01G281400.1
TraesCS3A01G271400.1
TraesCS3B01G305100.1
TraesCS3D01G271000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64813.1	TraesCS2A01G282700.1	AT3G48550.1	21798944
AT5G64813.1	TraesCS2B01G300000.1	AT3G48550.1	21798944
AT5G64813.1	TraesCS2D01G281400.1	AT3G48550.1	21798944
AT5G64813.1	TraesCS1A01G392300.1	AT3G58630.1	21798944
AT5G64813.1	TraesCS1B01G420500.1	AT3G58630.1	21798944
AT5G64813.1	TraesCS1D01G400500.1	AT3G58630.1	21798944
AT5G64813.1	TraesCS3A01G271400.1	AT3G58630.1	21798944
AT5G64813.1	TraesCS3B01G305100.1	AT3G58630.1	21798944
AT5G64813.1	TraesCS3D01G271000.1	AT3G58630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G227700.1	Wheat	cytosol	97.39	97.39
TraesCS4A01G071800.1	Wheat	cytosol, plastid	95.65	97.35
HORVU4Hr1G063900.7	Barley	cytosol	93.91	88.04
EER95186	Sorghum	cytosol, plastid	80.58	82.01
Zm00001d047945_P002	Maize	cytosol, plastid	80.29	81.71
Os03t0242200-01	Rice	cytosol	79.71	81.36
TraesCS1D01G166300.1	Wheat	cytosol	67.54	69.14
GSMUA_Achr10P...	Banana	cytosol	60.58	62.57
GSMUA_Achr2P16850_001	Banana	cytosol	60.87	62.31
PGSC0003DMT400080131	Potato	cytosol	58.84	60.78
Solyc04g051700.2.1	Tomato	cytosol	58.55	60.66
KRH59455	Soybean	cytosol	58.26	59.82
KRH43322	Soybean	cytosol	57.68	59.76
VIT_18s0001g02170.t01	Wine grape	cytosol	57.39	59.1
GSMUA_Achr6P00810_001	Banana	cytosol	57.68	58.88
AT5G64813.1	Thale cress	cytosol	57.97	58.48
VIT_07s0031g01700.t01	Wine grape	cytosol	56.23	57.74
CDY18693	Canola	cytosol	57.1	57.6
CDX81260	Canola	cytosol	57.1	57.6
Bra037797.1-P	Field mustard	cytosol	57.1	57.6
AT5G09910.1	Thale cress	cytosol	55.07	57.06
CDY14513	Canola	plasma membrane	59.42	55.56
Bra024329.1-P	Field mustard	cytosol	59.42	54.96
CDY08848	Canola	cytosol	59.13	54.84
KRH04620	Soybean	extracellular	11.01	35.51

Protein Annotations

EnsemblPlants:TraesCS4D01G228600.2	EnsemblPlantsGene:TraesCS4D01G228600	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	InterPro:Sigma_54_int_dom_ATP-bd_1
InterPro:Small_GTPase	PANTHER:PTHR24073	PANTHER:PTHR24073:SF492	PFAM:PF00071	PFscan:PS51419	PRINTS:PR00449
ScanProsite:PS00675	SEG:seg	SMART:SM00175	SUPFAM:SSF52540	MapMan:35.1	:

Description

No Description!

Coordinates

chr4D:-:388121478..388124392

Molecular Weight (calculated)

37822.5 Da

IEP (calculated)

9.309

GRAVY (calculated)

-0.363

Length

345 amino acids

Sequence
(BLAST)

001: MFWKDSSARS SSSSGREQSG VGPFGQVRVL VVGDSGVGKS SLVHLILEGS AIARPAQTVG CAVGIKHVTC GSAGGSSNNI SNDAERNFFV ELWDVSGHDR
101: YKACRSIFYT QINGVIFVYD LSQRKTKTNL NKWAVEVAET GTFSALLGSG GPGGLPVPYL VIANKVDIVP SDGTRVRSGS IVDLARQWLE KRGLLPCSEE
201: LPLTESFPGN SGLISAAKEA RYDKEAVTKF FRMLIRRRYF SNEPAVPSPW SLTPREDSTL PVVTRKDDTD SFQRKSYSGE DFMFNGVPPL PVQRNLPPPP
301: TLDPQLPVFS SDNYRYHRFS SPSLTEISSN RTISSNRTSR ENFNV

Best Arabidopsis Sequence Match ( AT5G09910.1 )
(BLAST)

001: MRFWRERGRE NKEHMVAPLC GQIRVLVVGD SGVGKSSLVH LIVKGSSIVR PSQTIGCTVG VKHLTYASPA SSSSIIKGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR TTKTNLQKWA GEVSVTGEFS APLSSGGPGG LPVPYIVIGN KADIAAKGGT NGSSGNLVDA ARHWVEKQGL LPHSDELPLS
201: ESFPSNVGLI MAAKEARYDK EALTKIFHML IRRRYFSDEL PSPSSAWSLS HAPSQRLDEG TSDEDQFYKR TSLREGDAYK YNTLPQHNLM QSPTLYPQQP
301: PDRYNYAIPR FSLSSVEETS NGNGRSKRMD INV

Arabidopsis Description

LIP2Small GTPase-like protein LIP2 [Source:UniProtKB/Swiss-Prot;Acc:F4KFD8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.