Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G64813.1 | Thale cress | cytosol | 79.88 | 77.78 |
| KRH43322 | Soybean | cytosol | 71.17 | 71.17 |
| KRH59455 | Soybean | cytosol | 71.47 | 70.83 |
| VIT_07s0031g01700.t01 | Wine grape | cytosol | 70.57 | 69.94 |
| Solyc04g051700.2.1 | Tomato | cytosol | 68.47 | 68.47 |
| PGSC0003DMT400080131 | Potato | cytosol | 68.47 | 68.26 |
| GSMUA_Achr10P... | Banana | cytosol | 67.27 | 67.07 |
| GSMUA_Achr2P16850_001 | Banana | cytosol | 67.27 | 66.47 |
| VIT_18s0001g02170.t01 | Wine grape | cytosol | 66.07 | 65.67 |
| EER91775 | Sorghum | cytosol | 64.26 | 63.13 |
| Os10t0135200-01 | Rice | cytosol | 64.26 | 62.39 |
| TraesCS1D01G166300.1 | Wheat | cytosol | 61.86 | 61.13 |
| GSMUA_Achr6P00810_001 | Banana | cytosol | 61.86 | 60.95 |
| TraesCS1B01G205000.1 | Wheat | cytosol | 61.56 | 60.83 |
| HORVU1Hr1G045310.7 | Barley | cytosol | 60.66 | 59.94 |
| Zm00001d047945_P002 | Maize | cytosol, plastid | 58.86 | 57.82 |
| EER95186 | Sorghum | cytosol, plastid | 58.26 | 57.23 |
| Os03t0242200-01 | Rice | cytosol | 57.66 | 56.8 |
| TraesCS4A01G071800.1 | Wheat | cytosol, plastid | 56.46 | 55.46 |
| TraesCS4B01G227700.1 | Wheat | cytosol | 57.06 | 55.07 |
| TraesCS4D01G228600.2 | Wheat | cytosol | 57.06 | 55.07 |
| TraesCS1A01G172300.2 | Wheat | cytosol | 58.86 | 52.13 |
| HORVU4Hr1G063900.7 | Barley | cytosol | 56.76 | 51.36 |
| KRH04620 | Soybean | extracellular | 15.32 | 47.66 |
| Zm00001d014330_P014 | Maize | plastid | 60.06 | 46.3 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:830852 | ProteinID:AED91466.1 | ProteinID:ANM69029.1 | ArrayExpress:AT5G09910 |
| EnsemblPlantsGene:AT5G09910 | RefSeq:AT5G09910 | TAIR:AT5G09910 | RefSeq:AT5G09910-TAIR-G | EnsemblPlants:AT5G09910.1 | TAIR:AT5G09910.1 |
| ProteinID:BAB09412.1 | UniProt:F4KFD8 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | RefSeq:NP_001318521.1 | RefSeq:NP_196553.2 | InterPro:P-loop_NTPase |
| PFAM:PF00071 | PRINTS:PR00449 | ScanProsite:PS00675 | PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF492 |
| SMART:SM00174 | SMART:SM00175 | SUPFAM:SSF52540 | InterPro:Sigma_54_int_dom_ATP-bd_1 | InterPro:Small_GTPase | UniParc:UPI0001505835 |
| SEG:seg | : | : | : | : | : |
Description
LIP2Small GTPase-like protein LIP2 [Source:UniProtKB/Swiss-Prot;Acc:F4KFD8]
Coordinates
chr5:+:3092733..3095156
Molecular Weight (calculated)
36895.5 Da
IEP (calculated)
8.719
GRAVY (calculated)
-0.486
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MRFWRERGRE NKEHMVAPLC GQIRVLVVGD SGVGKSSLVH LIVKGSSIVR PSQTIGCTVG VKHLTYASPA SSSSIIKGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR TTKTNLQKWA GEVSVTGEFS APLSSGGPGG LPVPYIVIGN KADIAAKGGT NGSSGNLVDA ARHWVEKQGL LPHSDELPLS
201: ESFPSNVGLI MAAKEARYDK EALTKIFHML IRRRYFSDEL PSPSSAWSLS HAPSQRLDEG TSDEDQFYKR TSLREGDAYK YNTLPQHNLM QSPTLYPQQP
301: PDRYNYAIPR FSLSSVEETS NGNGRSKRMD INV
101: RSLFYSQING VIFVHDLSQR TTKTNLQKWA GEVSVTGEFS APLSSGGPGG LPVPYIVIGN KADIAAKGGT NGSSGNLVDA ARHWVEKQGL LPHSDELPLS
201: ESFPSNVGLI MAAKEARYDK EALTKIFHML IRRRYFSDEL PSPSSAWSLS HAPSQRLDEG TSDEDQFYKR TSLREGDAYK YNTLPQHNLM QSPTLYPQQP
301: PDRYNYAIPR FSLSSVEETS NGNGRSKRMD INV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.