Factsheet for Zm00001d014330_P014

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003978_P001
Zm00001d011571_P001
Zm00001d016564_P001
Zm00001d030350_P001
Zm00001d038994_P001
Zm00001d043902_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64813.1	Zm00001d003978_P001	AT3G48550.1	21798944
AT5G64813.1	Zm00001d016564_P001	AT3G48550.1	21798944
AT5G64813.1	Zm00001d011571_P001	AT3G58630.1	21798944
AT5G64813.1	Zm00001d030350_P001	AT3G58630.1	21798944
AT5G64813.1	Zm00001d038994_P001	AT3G58630.1	21798944
AT5G64813.1	Zm00001d043902_P001	AT3G58630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91775	Sorghum	cytosol	68.29	87.02
Os10t0135200-01	Rice	cytosol	64.12	80.76
TraesCS1D01G166300.1	Wheat	cytosol	59.03	75.67
TraesCS1B01G205000.1	Wheat	cytosol	59.03	75.67
HORVU1Hr1G045310.7	Barley	cytosol	58.33	74.78
Zm00001d047945_P002	Maize	cytosol, plastid	54.86	69.91
TraesCS1A01G172300.2	Wheat	cytosol	59.26	68.09
GSMUA_Achr10P...	Banana	cytosol	49.31	63.77
GSMUA_Achr2P16850_001	Banana	cytosol	49.07	62.91
Solyc04g051700.2.1	Tomato	cytosol	48.15	62.46
PGSC0003DMT400080131	Potato	cytosol	48.15	62.28
GSMUA_Achr6P00810_001	Banana	cytosol	48.61	62.13
KRH43322	Soybean	cytosol	47.69	61.86
KRH59455	Soybean	cytosol	47.92	61.61
AT5G64813.1	Thale cress	cytosol	48.61	61.4
VIT_07s0031g01700.t01	Wine grape	cytosol	47.22	60.71
CDY18693	Canola	cytosol	47.92	60.53
CDX81260	Canola	cytosol	47.69	60.23
AT5G09910.1	Thale cress	cytosol	46.3	60.06
Bra037797.1-P	Field mustard	cytosol	47.45	59.94
VIT_18s0001g02170.t01	Wine grape	cytosol	46.06	59.4
CDY14513	Canola	plasma membrane	49.07	57.45
Bra024329.1-P	Field mustard	cytosol	49.07	56.84
CDY08848	Canola	cytosol	48.84	56.72
KRH04620	Soybean	extracellular	9.49	38.32

Protein Annotations

EntrezGene:100194186	EntrezGene:100383530	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6GS49	ProteinID:AQK65884.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF492
SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTPase	UniParc:UPI000844E1C5	EnsemblPlantsGene:Zm00001d014330	EnsemblPlants:Zm00001d014330_P014
EnsemblPlants:Zm00001d014330_T014	SEG:seg	:	:	:	:

Description

Ras-related small GTP-binding family protein

Coordinates

chr5:-:41110661..41123892

Molecular Weight (calculated)

47789.1 Da

IEP (calculated)

9.440

GRAVY (calculated)

-0.362

Length

432 amino acids

Sequence
(BLAST)

001: MGEAAMAMAG CSSPTTLRSS RLTTSISTSR LHKCMAYSVD QVEQSLLITG FGYEHDDARM TNINLFKEFT ALSRATILTT KEARTIAEMM LNHLCMQSIK
101: KETRHMLMKH LKSCVQSMAD YHCPQILTGV GKSSLVHLLL KDSAVARPAQ TIGCAVGVKH ITYSSPGSSS NSVKGDAERN FFVELWDVSG HERYKECRSL
201: FYSQINGVIF VYDLSQRKTK TNLNKWAVEV SESGTFSAPL GSGGPGGLPV PYLVIANKVD IAPRDGRRVS SGNLVDVARQ WVEKQGLLPS SEVLPLADNF
301: PGNSGLLTAA KEARYDKEAL IKFFRMLIRR RYFSNELPAP SPWSLTPRED TILPVETVND DDMFQRKSYG GQSYKYNGVT PLPAQRNLTP PPTLYPQQPM
401: SSSSENYRYH RFSSSSIPDS SGGSKSRANL NI

Best Arabidopsis Sequence Match ( AT5G64813.1 )
(BLAST)

001: MKFWRERERE NKEQILAPLC GQVRVLVVGD SGVGKTSLVH LINKGSSIVR PPQTIGCTVG VKHITYGSPA SSSSSIQGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGPGG LPVPYIVVGN KADIAAKEGT KGSSGNLVDA ARHWVEKQGL LPSSSEDLPL
201: FESFPGNGGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPAASPWSIS PVPTSSSQRL DEITSDDDQF YKRTSFHGDP YKYNNTIPPL PAQRNLTPPP
301: TLYPQQPVST PDNYTIPRYS LSSVQETTNN GSARSKRMDI NV

Arabidopsis Description

LIP1Small GTPase LIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.