Factsheet for VIT_07s0031g01700.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0028g02150.t01
VIT_17s0000g01360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64813.1	VIT_17s0000g01360.t01	AT3G48550.1	21798944
AT5G64813.1	VIT_12s0028g02150.t01	AT3G58630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43322	Soybean	cytosol	79.76	80.48
KRH59455	Soybean	cytosol	80.06	80.06
Solyc04g051700.2.1	Tomato	cytosol	75.6	76.28
VIT_18s0001g02170.t01	Wine grape	cytosol	75.89	76.12
PGSC0003DMT400080131	Potato	cytosol	75.3	75.75
GSMUA_Achr10P...	Banana	cytosol	74.7	75.15
GSMUA_Achr2P16850_001	Banana	cytosol	75.3	75.07
AT5G64813.1	Thale cress	cytosol	75.6	74.27
CDY18693	Canola	cytosol	72.62	71.34
Bra037797.1-P	Field mustard	cytosol	72.32	71.05
GSMUA_Achr6P00810_001	Banana	cytosol	71.13	70.71
AT5G09910.1	Thale cress	cytosol	69.94	70.57
CDX81260	Canola	cytosol	71.43	70.18
CDY14513	Canola	plasma membrane	74.7	68.02
Bra024329.1-P	Field mustard	cytosol	74.4	67.02
CDY08848	Canola	cytosol	73.51	66.4
EER91775	Sorghum	cytosol	66.07	65.49
Os10t0135200-01	Rice	cytosol	66.67	65.31
TraesCS1D01G166300.1	Wheat	cytosol	63.1	62.91
TraesCS1B01G205000.1	Wheat	cytosol	62.5	62.31
HORVU1Hr1G045310.7	Barley	cytosol	62.2	62.02
Zm00001d047945_P002	Maize	cytosol, plastid	61.31	60.77
EER95186	Sorghum	cytosol, plastid	61.31	60.77
Os03t0242200-01	Rice	cytosol	59.52	59.17
TraesCS4A01G071800.1	Wheat	cytosol, plastid	58.04	57.52
TraesCS4B01G227700.1	Wheat	cytosol	58.33	56.81
TraesCS4D01G228600.2	Wheat	cytosol	57.74	56.23
HORVU4Hr1G063900.7	Barley	cytosol	58.93	53.8
TraesCS1A01G172300.2	Wheat	cytosol	59.52	53.19
KRH04620	Soybean	extracellular	15.48	48.6
Zm00001d014330_P014	Maize	plastid	60.71	47.22

Protein Annotations

EntrezGene:100244132	wikigene:100244132	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A5AXG5	EMBL:AM439192
ProteinID:CAN80534	ProteinID:CAN80534.1	ProteinID:CBI21521	ProteinID:CBI21521.3	EMBL:FN595233	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
EntrezGene:LOC100244132	wikigene:LOC100244132	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF492	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTPase
UniParc:UPI0001523E64	ArrayExpress:VIT_07s0031g01700	EnsemblPlantsGene:VIT_07s0031g01700	EnsemblPlants:VIT_07s0031g01700.t01	unigene:Vvi.2187	RefSeq:XP_002279569
RefSeq:XP_002279569.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:-:17787116..17793131

Molecular Weight (calculated)

36652.4 Da

IEP (calculated)

9.076

GRAVY (calculated)

-0.432

Length

336 amino acids

Sequence
(BLAST)

001: MFWRERDREN KEHNGGGPPC GQVRVLVVGD SGVGKTSLVH LLVKGSSITQ PPQTVGCTVG VKHTAYGNSG SSSNSIKGDS ERDFFIELWD VSGHDRYKEC
101: RSLFYSQING VIFVHDLSQR RTKASLQKWA AEIAATGTFS APLGSGGPCG LPVPFIVIGN KTDIAAKEGT RGSSGNLVDV ARQWVEKQGL LPSSEELPLT
201: ESFPSSGGIL AAAKEARVDK EAVMKFFRLL IRRRYFSDEL PAPSPWSISP VQGPIQRAGD NLSEDNQFYK NTSLGGDPYK YNVLPPLPAQ RNLTPPPTLY
301: PQQPVSVAEN YNLPRFALNG SPEIINTRQK RADINV

Best Arabidopsis Sequence Match ( AT5G64813.1 )
(BLAST)

001: MKFWRERERE NKEQILAPLC GQVRVLVVGD SGVGKTSLVH LINKGSSIVR PPQTIGCTVG VKHITYGSPA SSSSSIQGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGPGG LPVPYIVVGN KADIAAKEGT KGSSGNLVDA ARHWVEKQGL LPSSSEDLPL
201: FESFPGNGGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPAASPWSIS PVPTSSSQRL DEITSDDDQF YKRTSFHGDP YKYNNTIPPL PAQRNLTPPP
301: TLYPQQPVST PDNYTIPRYS LSSVQETTNN GSARSKRMDI NV

Arabidopsis Description

LIP1Small GTPase LIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.