CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67755
CDX68463
CDX71939
CDX98311
CDY60454
CDY70544

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64813.1	CDX68463	AT3G48550.1	21798944
AT5G64813.1	CDY60454	AT3G48550.1	21798944
AT5G64813.1	CDY70544	AT3G48550.1	21798944
AT5G64813.1	CDX67755	AT3G58630.1	21798944
AT5G64813.1	CDX71939	AT3G58630.1	21798944
AT5G64813.1	CDX98311	AT3G58630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037797.1-P	Field mustard	cytosol	97.37	97.37
CDX81260	Canola	cytosol	97.37	97.37
AT5G64813.1	Thale cress	cytosol	92.11	92.11
CDY14513	Canola	plasma membrane	92.11	85.37
CDY08848	Canola	cytosol	91.52	84.14
KRH59455	Soybean	cytosol	74.56	75.89
KRH43322	Soybean	cytosol	73.68	75.68
Solyc04g051700.2.1	Tomato	cytosol	71.64	73.57
PGSC0003DMT400080131	Potato	cytosol	71.34	73.05
VIT_07s0031g01700.t01	Wine grape	cytosol	71.34	72.62
GSMUA_Achr10P...	Banana	cytosol	69.88	71.56
VIT_18s0001g02170.t01	Wine grape	cytosol	68.42	69.85
GSMUA_Achr2P16850_001	Banana	cytosol	68.71	69.73
EER91775	Sorghum	cytosol	65.2	65.78
GSMUA_Achr6P00810_001	Banana	cytosol	64.62	65.38
Os10t0135200-01	Rice	cytosol	64.91	64.72
TraesCS1D01G166300.1	Wheat	cytosol	63.16	64.09
TraesCS1B01G205000.1	Wheat	cytosol	61.99	62.91
HORVU1Hr1G045310.7	Barley	cytosol	61.7	62.61
Os03t0242200-01	Rice	cytosol	59.94	60.65
Zm00001d047945_P002	Maize	cytosol, plastid	59.94	60.47
EER95186	Sorghum	cytosol, plastid	59.65	60.18
TraesCS4A01G071800.1	Wheat	cytosol, plastid	57.6	58.11
TraesCS4B01G227700.1	Wheat	cytosol	57.89	57.39
TraesCS4D01G228600.2	Wheat	cytosol	57.6	57.1
TraesCS1A01G172300.2	Wheat	cytosol	60.53	55.05
HORVU4Hr1G063900.7	Barley	cytosol	57.02	52.99
Zm00001d014330_P014	Maize	plastid	60.53	47.92
KRH04620	Soybean	extracellular	14.33	45.79

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078G221	UniProt:A0A078G221	EnsemblPlants:CDY18693	ProteinID:CDY18693
ProteinID:CDY18693.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00005770001	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
ScanProsite:PS00675	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF492	SMART:SM00174	SMART:SM00175
SUPFAM:SSF52540	InterPro:Sigma_54_int_dom_ATP-bd_1	InterPro:Small_GTPase	UniParc:UPI0004EE1E05	SEG:seg	:

Description

BnaA09g07020DBnaA09g07020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G221]

Coordinates

chrLK032087:-:546374..548326

Molecular Weight (calculated)

37718.3 Da

IEP (calculated)

8.881

GRAVY (calculated)

-0.527

Length

342 amino acids

Sequence
(BLAST)

001: MRFWRERERE SKEQILAPLC GQVRVLVVGD SGVGKTSLVQ LINKGCSIQR PCQTIGCTVG VKHITYGSPG SSSSSIQGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGGPG GLPVPYIVVG NKADIAAKEG TKGSSGNLVD AARHWVEKQG LLSSSEDLPV
201: FDSFPGNAGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPPASPWSIP TSSSQRLDEI TSDEDQFYKR TSFHGDPYKY NNTLPPLAAQ RNLTSPPPTL
301: YPQQQQPVST PDNYAVPRFS LSSLQETSNN GSGRSKRMDI NV

Best Arabidopsis Sequence Match ( AT5G64813.1 )
(BLAST)

001: MKFWRERERE NKEQILAPLC GQVRVLVVGD SGVGKTSLVH LINKGSSIVR PPQTIGCTVG VKHITYGSPA SSSSSIQGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGPGG LPVPYIVVGN KADIAAKEGT KGSSGNLVDA ARHWVEKQGL LPSSSEDLPL
201: FESFPGNGGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPAASPWSIS PVPTSSSQRL DEITSDDDQF YKRTSFHGDP YKYNNTIPPL PAQRNLTPPP
301: TLYPQQPVST PDNYTIPRYS LSSVQETTNN GSARSKRMDI NV

Arabidopsis Description

LIP1Small GTPase LIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.