Factsheet for Os10t0135200-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0674000-01
Os04t0386300-01
Os05t0560600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64813.1	Os04t0386300-01	AT3G48550.1	21798944
AT5G64813.1	Os01t0674000-01	AT3G58630.1	21798944
AT5G64813.1	Os05t0560600-01	AT3G58630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91775	Sorghum	cytosol	88.63	89.68
TraesCS1D01G166300.1	Wheat	cytosol	83.97	85.46
TraesCS1B01G205000.1	Wheat	cytosol	82.22	83.68
HORVU1Hr1G045310.7	Barley	cytosol	81.92	83.38
Os03t0242200-01	Rice	cytosol	76.09	77.22
TraesCS1A01G172300.2	Wheat	cytosol	77.84	71.01
GSMUA_Achr10P...	Banana	cytosol	68.8	70.66
PGSC0003DMT400080131	Potato	cytosol	67.93	69.76
GSMUA_Achr2P16850_001	Banana	cytosol	68.51	69.73
Solyc04g051700.2.1	Tomato	cytosol	67.64	69.67
KRH43322	Soybean	cytosol	67.06	69.07
KRH59455	Soybean	cytosol	67.06	68.45
GSMUA_Achr6P00810_001	Banana	cytosol	66.18	67.16
AT5G64813.1	Thale cress	cytosol	66.47	66.67
VIT_07s0031g01700.t01	Wine grape	cytosol	65.31	66.67
VIT_18s0001g02170.t01	Wine grape	cytosol	64.43	65.97
Bra037797.1-P	Field mustard	cytosol	65.01	65.2
CDY18693	Canola	cytosol	64.72	64.91
AT5G09910.1	Thale cress	cytosol	62.39	64.26
Zm00001d014330_P014	Maize	plastid	80.76	64.12
CDX81260	Canola	cytosol	63.85	64.04
CDY14513	Canola	plasma membrane	66.76	62.06
Bra024329.1-P	Field mustard	cytosol	66.76	61.39
CDY08848	Canola	cytosol	66.18	61.02
KRH04620	Soybean	extracellular	12.24	39.25

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4348056	ProteinID:ABB46697.1	EMBL:AK068217	ProteinID:BAF26031.1
ProteinID:BAT09797.1	ProteinID:EEE50533.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:Os10g0135200	EnsemblPlants:Os10t0135200-01	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	ScanProsite:PS00675	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF492
UniProt:Q33B74	SMART:SM00175	SUPFAM:SSF52540	InterPro:Sigma_54_int_dom_ATP-bd_1	InterPro:Small_GTPase	UniParc:UPI00005E1B6C
RefSeq:XP_015612970.1	SEG:seg	:	:	:	:

Description

Ras GTPase family protein. (Os10t0135200-01)

Coordinates

chr10:-:2178841..2183095

Molecular Weight (calculated)

37309.0 Da

IEP (calculated)

9.625

GRAVY (calculated)

-0.421

Length

343 amino acids

Sequence
(BLAST)

001: MRFWRDSGGG GSGGGRDLNG GGTPCGQVRV LVVGDSGVGK SSLVHLILKG SAIARPPQTI GCAVDVKHIT YGSPGSSSNS INSIKGDAER NFFVELWDVS
101: GHERYKECRS LFYSQINGVI FVYDLSQRKT KTNLNKWAVE VAESGTFSAP LGSGGPGGLP VPYLVIANKV DIAPRDGKRV SSGNLVDVAR QWVEKQGLLP
201: SSEELPLAES FPGNSGLLTA AKVARYDKEA LVKFFRMLIR RRYFSNELPA PSPWSLTPRE DTILPVETTN DDDLFQRKSY AGQSYKYSGV TPLPAQRNLT
301: PPPTLYPQQP MSSSSENYRY HRFSSSAIPD ASSSRTNRAD INI

Best Arabidopsis Sequence Match ( AT5G64813.1 )
(BLAST)

001: MKFWRERERE NKEQILAPLC GQVRVLVVGD SGVGKTSLVH LINKGSSIVR PPQTIGCTVG VKHITYGSPA SSSSSIQGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGPGG LPVPYIVVGN KADIAAKEGT KGSSGNLVDA ARHWVEKQGL LPSSSEDLPL
201: FESFPGNGGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPAASPWSIS PVPTSSSQRL DEITSDDDQF YKRTSFHGDP YKYNNTIPPL PAQRNLTPPP
301: TLYPQQPVST PDNYTIPRYS LSSVQETTNN GSARSKRMDI NV

Arabidopsis Description

LIP1Small GTPase LIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.