Factsheet for TraesCS1D01G166300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G392300.1
TraesCS1B01G420500.1
TraesCS1D01G400500.1
TraesCS2A01G282700.1
TraesCS2B01G300000.1
TraesCS2D01G281400.1
TraesCS3A01G271400.1
TraesCS3B01G305100.1
TraesCS3D01G271000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64813.1	TraesCS2A01G282700.1	AT3G48550.1	21798944
AT5G64813.1	TraesCS2B01G300000.1	AT3G48550.1	21798944
AT5G64813.1	TraesCS2D01G281400.1	AT3G48550.1	21798944
AT5G64813.1	TraesCS1A01G392300.1	AT3G58630.1	21798944
AT5G64813.1	TraesCS1B01G420500.1	AT3G58630.1	21798944
AT5G64813.1	TraesCS1D01G400500.1	AT3G58630.1	21798944
AT5G64813.1	TraesCS3A01G271400.1	AT3G58630.1	21798944
AT5G64813.1	TraesCS3B01G305100.1	AT3G58630.1	21798944
AT5G64813.1	TraesCS3D01G271000.1	AT3G58630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G205000.1	Wheat	cytosol	97.92	97.92
HORVU1Hr1G045310.7	Barley	cytosol	97.03	97.03
Os10t0135200-01	Rice	cytosol	85.46	83.97
EER91775	Sorghum	cytosol	83.68	83.19
TraesCS1A01G172300.2	Wheat	cytosol	91.1	81.65
GSMUA_Achr10P...	Banana	cytosol	67.66	68.26
TraesCS4D01G228600.2	Wheat	cytosol	69.14	67.54
Solyc04g051700.2.1	Tomato	cytosol	65.58	66.37
PGSC0003DMT400080131	Potato	cytosol	65.58	66.17
GSMUA_Achr2P16850_001	Banana	cytosol	65.88	65.88
KRH43322	Soybean	cytosol	64.69	65.47
KRH59455	Soybean	cytosol	64.69	64.88
Bra037797.1-P	Field mustard	cytosol	64.09	63.16
CDY18693	Canola	cytosol	64.09	63.16
VIT_07s0031g01700.t01	Wine grape	cytosol	62.91	63.1
AT5G64813.1	Thale cress	cytosol	63.8	62.87
GSMUA_Achr6P00810_001	Banana	cytosol	62.91	62.72
CDX81260	Canola	cytosol	63.2	62.28
VIT_18s0001g02170.t01	Wine grape	cytosol	61.72	62.09
AT5G09910.1	Thale cress	cytosol	61.13	61.86
CDY14513	Canola	plasma membrane	64.69	59.08
Zm00001d014330_P014	Maize	plastid	75.67	59.03
Bra024329.1-P	Field mustard	cytosol	64.69	58.45
CDY08848	Canola	cytosol	64.09	58.06
KRH04620	Soybean	extracellular	12.17	38.32

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
ScanProsite:PS00675	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF492	SMART:SM00173	SMART:SM00175
SUPFAM:SSF52540	InterPro:Sigma_54_int_dom_ATP-bd_1	InterPro:Small_GTPase	EnsemblPlantsGene:TraesCS1D01G166300	EnsemblPlants:TraesCS1D01G166300.1	SEG:seg

Description

No Description!

Coordinates

chr1D:-:237324953..237334693

Molecular Weight (calculated)

36933.6 Da

IEP (calculated)

9.849

GRAVY (calculated)

-0.414

Length

337 amino acids

Sequence
(BLAST)

001: MRFWRDGGAS GSGRDLNGGM PYGQVRVLVV GDSGVGKSSL ARLILQGSAI ARPTQTIGCT VDVKHITYGS PGSSSNSIVG DAERNFFVEL WDVSGHDRYR
101: DCRSLFYSQI NGVIFVYDLS QRKTKTNLSK WAVEVAESGT FSAPLGSGGP GGLPVPYLVI ANKVDIAPRD GRRVSSGNLI DVARQWVDKQ GLLPSSEELP
201: LVDSFPGNSG LLTAAKEARY DKEAVVKFFR MLIRRRYFSN ELPAPSPWSL TPRGDTILPV ETTNDEELFK RKSYGGQRYK YNGVAPLSAQ QNVTLPLTPS
301: PQQPMSSSAE NYRYHRFSSS AIPDKNSSRT SRLDINL

Best Arabidopsis Sequence Match ( AT5G64813.1 )
(BLAST)

001: MKFWRERERE NKEQILAPLC GQVRVLVVGD SGVGKTSLVH LINKGSSIVR PPQTIGCTVG VKHITYGSPA SSSSSIQGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGPGG LPVPYIVVGN KADIAAKEGT KGSSGNLVDA ARHWVEKQGL LPSSSEDLPL
201: FESFPGNGGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPAASPWSIS PVPTSSSQRL DEITSDDDQF YKRTSFHGDP YKYNNTIPPL PAQRNLTPPP
301: TLYPQQPVST PDNYTIPRYS LSSVQETTNN GSARSKRMDI NV

Arabidopsis Description

LIP1Small GTPase LIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.