Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g112920.1.1 | |
| Solyc07g055100.2.1 | |
| Solyc12g010890.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G64813.1 | Solyc03g112920.1.1 | AT3G48550.1 | 21798944 |
| AT5G64813.1 | Solyc07g055100.2.1 | AT3G58630.1 | 21798944 |
| AT5G64813.1 | Solyc12g010890.1.1 | AT3G58630.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400080131 | Potato | cytosol | 99.1 | 98.8 |
| KRH59455 | Soybean | cytosol | 76.28 | 75.6 |
| VIT_07s0031g01700.t01 | Wine grape | cytosol | 76.28 | 75.6 |
| KRH43322 | Soybean | cytosol | 75.38 | 75.38 |
| AT5G64813.1 | Thale cress | cytosol | 76.88 | 74.85 |
| VIT_18s0001g02170.t01 | Wine grape | cytosol | 73.27 | 72.84 |
| Bra037797.1-P | Field mustard | cytosol | 73.57 | 71.64 |
| CDY18693 | Canola | cytosol | 73.57 | 71.64 |
| GSMUA_Achr2P16850_001 | Banana | cytosol | 72.37 | 71.51 |
| GSMUA_Achr10P... | Banana | cytosol | 71.17 | 70.96 |
| CDX81260 | Canola | cytosol | 72.67 | 70.76 |
| CDY14513 | Canola | plasma membrane | 75.98 | 68.56 |
| AT5G09910.1 | Thale cress | cytosol | 68.47 | 68.47 |
| GSMUA_Achr6P00810_001 | Banana | cytosol | 69.07 | 68.05 |
| Bra024329.1-P | Field mustard | cytosol | 75.98 | 67.83 |
| Os10t0135200-01 | Rice | cytosol | 69.67 | 67.64 |
| CDY08848 | Canola | cytosol | 75.08 | 67.2 |
| EER91775 | Sorghum | cytosol | 68.17 | 66.96 |
| TraesCS1D01G166300.1 | Wheat | cytosol | 66.37 | 65.58 |
| HORVU1Hr1G045310.7 | Barley | cytosol | 65.47 | 64.69 |
| TraesCS1B01G205000.1 | Wheat | cytosol | 65.17 | 64.39 |
| Zm00001d047945_P002 | Maize | cytosol, plastid | 63.06 | 61.95 |
| EER95186 | Sorghum | cytosol, plastid | 62.46 | 61.36 |
| TraesCS4A01G071800.1 | Wheat | cytosol, plastid | 61.26 | 60.18 |
| Os03t0242200-01 | Rice | cytosol | 60.96 | 60.06 |
| TraesCS4D01G228600.2 | Wheat | cytosol | 60.66 | 58.55 |
| TraesCS4B01G227700.1 | Wheat | cytosol | 60.36 | 58.26 |
| TraesCS1A01G172300.2 | Wheat | cytosol | 62.76 | 55.59 |
| HORVU4Hr1G063900.7 | Barley | cytosol | 60.36 | 54.62 |
| Zm00001d014330_P014 | Maize | plastid | 62.46 | 48.15 |
| KRH04620 | Soybean | extracellular | 13.81 | 42.99 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | UniProt:K4BSC9 | InterPro:P-loop_NTPase | PFAM:PF00071 |
| PRINTS:PR00449 | ScanProsite:PS00675 | PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF492 | SMART:SM00175 |
| SUPFAM:SSF52540 | InterPro:Sigma_54_int_dom_ATP-bd_1 | InterPro:Small_GTPase | EnsemblPlantsGene:Solyc04g051700.2 | EnsemblPlants:Solyc04g051700.2.1 | UniParc:UPI000276735F |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4:+:51022896..51030005
Molecular Weight (calculated)
36590.2 Da
IEP (calculated)
9.148
GRAVY (calculated)
-0.477
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MFWRERERET KEQNGGPPCG QVRVLVVGDS GVGKTSLVHL ILNGSSIVRP PQTIGCTVGV KHTTYGNSGS SSTSIKGDAE RDFFIELWDI SGHDRYKDCR
101: SLFYSQINGV IFVYDLSQRR TKTSLQKWAV EIATAGTFSA PLASGGPGGL PVPYIVIGNK ADIATNEGVR GSSGNLVDMA RLWVEKQGLL PSSEEIPLTE
201: SFPGGGGLIA AAKGARYDKE AVMKFFRMLI RRRYFSDDLP GNHWSSPVQK PLHGSSEISN DDDHLYKSKS SSYIGDSYKY NTLPPLPAQR NLTPPPTLYP
301: QQPMSTPDNY SIPRFASTQD MSSARYKRSD INV
101: SLFYSQINGV IFVYDLSQRR TKTSLQKWAV EIATAGTFSA PLASGGPGGL PVPYIVIGNK ADIATNEGVR GSSGNLVDMA RLWVEKQGLL PSSEEIPLTE
201: SFPGGGGLIA AAKGARYDKE AVMKFFRMLI RRRYFSDDLP GNHWSSPVQK PLHGSSEISN DDDHLYKSKS SSYIGDSYKY NTLPPLPAQR NLTPPPTLYP
301: QQPMSTPDNY SIPRFASTQD MSSARYKRSD INV
001: MKFWRERERE NKEQILAPLC GQVRVLVVGD SGVGKTSLVH LINKGSSIVR PPQTIGCTVG VKHITYGSPA SSSSSIQGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGPGG LPVPYIVVGN KADIAAKEGT KGSSGNLVDA ARHWVEKQGL LPSSSEDLPL
201: FESFPGNGGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPAASPWSIS PVPTSSSQRL DEITSDDDQF YKRTSFHGDP YKYNNTIPPL PAQRNLTPPP
301: TLYPQQPVST PDNYTIPRYS LSSVQETTNN GSARSKRMDI NV
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGPGG LPVPYIVVGN KADIAAKEGT KGSSGNLVDA ARHWVEKQGL LPSSSEDLPL
201: FESFPGNGGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPAASPWSIS PVPTSSSQRL DEITSDDDQF YKRTSFHGDP YKYNNTIPPL PAQRNLTPPP
301: TLYPQQPVST PDNYTIPRYS LSSVQETTNN GSARSKRMDI NV
Arabidopsis Description
LIP1Small GTPase LIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.