Factsheet for TraesCS4A01G071800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G392300.1
TraesCS1B01G420500.1
TraesCS1D01G400500.1
TraesCS2A01G282700.1
TraesCS2B01G300000.1
TraesCS2D01G281400.1
TraesCS3A01G271400.1
TraesCS3B01G305100.1
TraesCS3D01G271000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64813.1	TraesCS2A01G282700.1	AT3G48550.1	21798944
AT5G64813.1	TraesCS2B01G300000.1	AT3G48550.1	21798944
AT5G64813.1	TraesCS2D01G281400.1	AT3G48550.1	21798944
AT5G64813.1	TraesCS1A01G392300.1	AT3G58630.1	21798944
AT5G64813.1	TraesCS1B01G420500.1	AT3G58630.1	21798944
AT5G64813.1	TraesCS1D01G400500.1	AT3G58630.1	21798944
AT5G64813.1	TraesCS3A01G271400.1	AT3G58630.1	21798944
AT5G64813.1	TraesCS3B01G305100.1	AT3G58630.1	21798944
AT5G64813.1	TraesCS3D01G271000.1	AT3G58630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G227700.1	Wheat	cytosol	97.64	95.94
TraesCS4D01G228600.2	Wheat	cytosol	97.35	95.65
HORVU4Hr1G063900.7	Barley	cytosol	95.87	88.32
Zm00001d047945_P002	Maize	cytosol, plastid	82.3	82.3
Os03t0242200-01	Rice	cytosol	81.71	81.95
EER95186	Sorghum	cytosol, plastid	81.71	81.71
GSMUA_Achr2P16850_001	Banana	cytosol	61.95	62.31
GSMUA_Achr10P...	Banana	cytosol	61.36	62.28
PGSC0003DMT400080131	Potato	cytosol	60.47	61.38
Solyc04g051700.2.1	Tomato	cytosol	60.18	61.26
KRH43322	Soybean	cytosol	59.0	60.06
KRH59455	Soybean	cytosol	59.29	59.82
VIT_18s0001g02170.t01	Wine grape	cytosol	58.7	59.4
GSMUA_Achr6P00810_001	Banana	cytosol	59.0	59.17
TraesCS1A01G172300.2	Wheat	cytosol	65.49	59.04
AT5G64813.1	Thale cress	cytosol	59.0	58.48
VIT_07s0031g01700.t01	Wine grape	cytosol	57.52	58.04
Bra037797.1-P	Field mustard	cytosol	58.11	57.6
CDY18693	Canola	cytosol	58.11	57.6
CDX81260	Canola	cytosol	58.11	57.6
AT5G09910.1	Thale cress	cytosol	55.46	56.46
CDY14513	Canola	plasma membrane	60.47	55.56
Bra024329.1-P	Field mustard	cytosol	60.47	54.96
CDY08848	Canola	cytosol	60.18	54.84
KRH04620	Soybean	extracellular	11.21	35.51

Protein Annotations

EnsemblPlants:TraesCS4A01G071800.1	EnsemblPlantsGene:TraesCS4A01G071800	Gene3D:3.40.50.300	InterPro:P-loop_NTPase	InterPro:Sigma_54_int_dom_ATP-bd_1	PANTHER:PTHR24073
PANTHER:PTHR24073:SF492	PFAM:PF08477	PFscan:PS51419	PRINTS:PR00449	ScanProsite:PS00675	SEG:seg
SMART:SM00175	SUPFAM:SSF52540	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr4A:-:69317380..69320199

Molecular Weight (calculated)

37186.9 Da

IEP (calculated)

9.480

GRAVY (calculated)

-0.346

Length

339 amino acids

Sequence
(BLAST)

001: MFWKDSSARS SSSSGREQSG VGPFGQVRVL VVGDSGVGKS SLVHLILEGS AIARPAQTVG CAVGIKHVTC GSAGGSSNNI SNDAERNFFV ELWDVSGHDR
101: YKACRSIFYT QINGVIFVYD LSQRKTKTNL NKWAVEVAET GTFSAILGSG GPGGLPVPYL VIANKVDIVP SDGSRVRSGS IVDLARQWIE KRGLLPRSEE
201: LPLTESFPGN SGLISAAKEA RYDKEAVTKF FRMLIRRRYF SNEPAVPSPW SLIPREDSIL PVVTRKDDAD SFQRKSYSGE DFMFNGVPPL PAQRNLPPPP
301: TLDPQLPVFS SDNYRYHRFS SPSLTEMSSN RTSRENFNV

Best Arabidopsis Sequence Match ( AT5G64813.1 )
(BLAST)

001: MKFWRERERE NKEQILAPLC GQVRVLVVGD SGVGKTSLVH LINKGSSIVR PPQTIGCTVG VKHITYGSPA SSSSSIQGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGPGG LPVPYIVVGN KADIAAKEGT KGSSGNLVDA ARHWVEKQGL LPSSSEDLPL
201: FESFPGNGGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPAASPWSIS PVPTSSSQRL DEITSDDDQF YKRTSFHGDP YKYNNTIPPL PAQRNLTPPP
301: TLYPQQPVST PDNYTIPRYS LSSVQETTNN GSARSKRMDI NV

Arabidopsis Description

LIP1Small GTPase LIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.