Factsheet for GSMUA_Achr6P00810_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P11500_001
GSMUA_Achr1P27460_001
GSMUA_Achr5P09160_001
GSMUA_Achr6P06410_001
GSMUA_Achr6P20920_001
GSMUA_Achr6P26840_001
GSMUA_Achr9P06410_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64813.1	GSMUA_Achr6P06410_001	AT3G48550.1	21798944
AT5G64813.1	GSMUA_Achr6P20920_001	AT3G48550.1	21798944
AT5G64813.1	GSMUA_Achr1P11500_001	AT3G58630.1	21798944
AT5G64813.1	GSMUA_Achr1P27460_001	AT3G58630.1	21798944
AT5G64813.1	GSMUA_Achr5P09160_001	AT3G58630.1	21798944
AT5G64813.1	GSMUA_Achr6P26840_001	AT3G58630.1	21798944
AT5G64813.1	GSMUA_Achr9P06410_001	AT3G58630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	79.88	80.84
GSMUA_Achr2P16850_001	Banana	cytosol	79.29	79.53
VIT_07s0031g01700.t01	Wine grape	cytosol	70.71	71.13
Solyc04g051700.2.1	Tomato	cytosol	68.05	69.07
KRH43322	Soybean	cytosol	68.05	69.07
KRH59455	Soybean	cytosol	68.64	69.05
PGSC0003DMT400080131	Potato	cytosol	67.75	68.56
EER91775	Sorghum	cytosol	67.16	66.96
VIT_18s0001g02170.t01	Wine grape	cytosol	66.27	66.87
Os10t0135200-01	Rice	cytosol	67.16	66.18
AT5G64813.1	Thale cress	cytosol	66.57	65.79
CDY18693	Canola	cytosol	65.38	64.62
Bra037797.1-P	Field mustard	cytosol	64.79	64.04
CDX81260	Canola	cytosol	64.79	64.04
Os03t0242200-01	Rice	cytosol	63.02	63.02
TraesCS1D01G166300.1	Wheat	cytosol	62.72	62.91
TraesCS1B01G205000.1	Wheat	cytosol	62.13	62.31
Zm00001d047945_P002	Maize	cytosol, plastid	62.43	62.24
AT5G09910.1	Thale cress	cytosol	60.95	61.86
HORVU1Hr1G045310.7	Barley	cytosol	61.54	61.72
CDY14513	Canola	plasma membrane	67.16	61.52
Bra024329.1-P	Field mustard	cytosol	67.16	60.86
EER95186	Sorghum	cytosol, plastid	60.95	60.77
CDY08848	Canola	cytosol	66.57	60.48
TraesCS4A01G071800.1	Wheat	cytosol, plastid	59.17	59.0
TraesCS4D01G228600.2	Wheat	cytosol	58.88	57.68
TraesCS4B01G227700.1	Wheat	cytosol	58.58	57.39
HORVU4Hr1G063900.7	Barley	cytosol	59.17	54.35
TraesCS1A01G172300.2	Wheat	cytosol	58.88	52.93
Zm00001d014330_P014	Maize	plastid	62.13	48.61
KRH04620	Soybean	extracellular	13.02	41.12

Protein Annotations

EnsemblPlants:GSMUA_Achr6P00810_001	EnsemblPlants:GSMUA_Achr6T00810_001	EnsemblPlantsGene:GSMUA_Achr6G00810_001	Gene3D:3.40.50.300	InterPro:P-loop_NTPase	PANTHER:PTHR24073
PANTHER:PTHR24073:SF492	PFAM:PF08477	PFscan:PS51419	PRINTS:PR00449	SEG:seg	SMART:SM00175
SUPFAM:SSF52540	UniParc:UPI0002954C6A	UniProt:M0T329	MapMan:35.1	:	:

Description

Uncharacterized GTP-binding protein At5g64813 [Source:GMGC_GENE;Acc:GSMUA_Achr6G00810_001]

Coordinates

chr6:-:553117..561226

Molecular Weight (calculated)

37359.2 Da

IEP (calculated)

8.709

GRAVY (calculated)

-0.391

Length

338 amino acids

Sequence
(BLAST)

001: MFWRERERDT SDGEQNGGPP CGQVRVLVVG DAGVGKTSLV HLILKGTSIA RPSQTVGCSV GVKHISYGSA SSSSNSIKGD AQRDFFVELW DVSGHERYKD
101: CRFLFYTQID GVIFVHDLSQ RRTKTNLHKW AAEITANGTF STRLGSGGPG GLPVPYLVIG NKTDIVAKVG TRVMSSGNLV DVARQWVEKQ GLLPSSEQLP
201: LTDSFPGNSD LLAAAKEARY DKEAVIKFFR LLIRRIYISD ELPDPSPWSI SPLQNPIYYT GENLSDDDHY HRRLSSSSES YKYDVLPLLP AHRSLAPAPT
301: LYPQQPMSMP ENYSFHRLSA TGLPRISSTK LNKADTNI

Best Arabidopsis Sequence Match ( AT5G64813.1 )
(BLAST)

001: MKFWRERERE NKEQILAPLC GQVRVLVVGD SGVGKTSLVH LINKGSSIVR PPQTIGCTVG VKHITYGSPA SSSSSIQGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGPGG LPVPYIVVGN KADIAAKEGT KGSSGNLVDA ARHWVEKQGL LPSSSEDLPL
201: FESFPGNGGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPAASPWSIS PVPTSSSQRL DEITSDDDQF YKRTSFHGDP YKYNNTIPPL PAQRNLTPPP
301: TLYPQQPVST PDNYTIPRYS LSSVQETTNN GSARSKRMDI NV

Arabidopsis Description

LIP1Small GTPase LIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.