CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES03423
EES05120
EES12026
EES18672

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64813.1	EES05120	AT3G48550.1	21798944
AT5G64813.1	EES12026	AT3G48550.1	21798944
AT5G64813.1	EES03423	AT3G58630.1	21798944
AT5G64813.1	EES18672	AT3G58630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047945_P002	Maize	cytosol, plastid	95.28	95.28
Os03t0242200-01	Rice	cytosol	82.89	83.14
TraesCS4A01G071800.1	Wheat	cytosol, plastid	81.71	81.71
TraesCS4D01G228600.2	Wheat	cytosol	82.01	80.58
TraesCS4B01G227700.1	Wheat	cytosol	81.42	80.0
EER91775	Sorghum	cytosol	76.7	76.7
HORVU4Hr1G063900.7	Barley	cytosol	81.71	75.27
GSMUA_Achr10P...	Banana	cytosol	64.31	65.27
GSMUA_Achr2P16850_001	Banana	cytosol	64.01	64.39
PGSC0003DMT400080131	Potato	cytosol	61.65	62.57
Solyc04g051700.2.1	Tomato	cytosol	61.36	62.46
KRH59455	Soybean	cytosol	61.36	61.9
KRH43322	Soybean	cytosol	60.77	61.86
VIT_07s0031g01700.t01	Wine grape	cytosol	60.77	61.31
GSMUA_Achr6P00810_001	Banana	cytosol	60.77	60.95
AT5G64813.1	Thale cress	cytosol	61.06	60.53
Bra037797.1-P	Field mustard	cytosol	60.47	59.94
VIT_18s0001g02170.t01	Wine grape	cytosol	59.0	59.7
CDY18693	Canola	cytosol	60.18	59.65
CDX81260	Canola	cytosol	59.29	58.77
AT5G09910.1	Thale cress	cytosol	57.23	58.26
CDY14513	Canola	plasma membrane	62.83	57.72
CDY08848	Canola	cytosol	62.83	57.26
Bra024329.1-P	Field mustard	cytosol	62.54	56.84
KRH04620	Soybean	extracellular	11.21	35.51

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8054359	UniProt:C5WR10	EnsemblPlants:EER95186	ProteinID:EER95186
ProteinID:EER95186.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	ScanProsite:PS00675
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF492	SMART:SM00175	EnsemblPlantsGene:SORBI_3001G440000	SUPFAM:SSF52540
InterPro:Sigma_54_int_dom_ATP-bd_1	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0001A8329B	RefSeq:XP_002468188.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:71797446..71801583

Molecular Weight (calculated)

36793.5 Da

IEP (calculated)

9.744

GRAVY (calculated)

-0.327

Length

339 amino acids

Sequence
(BLAST)

001: MFWKDSGSRS SSGSGRDQNG VGPFGQVRVL IVGDSGVGKS SLLHLILKSS AIARPAQTVG CTVGVKHVTY GSAGGSSNNI SDAERNFFVE LLDVSGHERY
101: KACRSIFYTQ INGVIFVYDL SQRKTKTNLN KWAVEVAETG TFSAPLGSGG PGGLPVPYLV IANKVDIVPR DGTRASRGNL VDLARQWAEK QGLLRCSEEL
201: PLTESFPGNS GLVSAAKQAR YDKEAVIKFF RLLIRRRYFS NEPPAPSPWS LTPREDTILP VESLGGGVDS FQRKSLSGDG FLYNGVVPLP AQRNLTPPPT
301: LNPQQPVSSL DNYRYHRFSS SSLPDVSSNR TSREDIIDV

Best Arabidopsis Sequence Match ( AT5G64813.1 )
(BLAST)

001: MKFWRERERE NKEQILAPLC GQVRVLVVGD SGVGKTSLVH LINKGSSIVR PPQTIGCTVG VKHITYGSPA SSSSSIQGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGPGG LPVPYIVVGN KADIAAKEGT KGSSGNLVDA ARHWVEKQGL LPSSSEDLPL
201: FESFPGNGGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPAASPWSIS PVPTSSSQRL DEITSDDDQF YKRTSFHGDP YKYNNTIPPL PAQRNLTPPP
301: TLYPQQPVST PDNYTIPRYS LSSVQETTNN GSARSKRMDI NV

Arabidopsis Description

LIP1Small GTPase LIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.