CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 3
extracellular 3
nucleus 2
mitochondrion 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03966
KRH22283
KRH27047
KRH57236

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64813.1	KRH03966	AT3G48550.1	21798944
AT5G64813.1	KRH57236	AT3G48550.1	21798944
AT5G64813.1	KRH22283	AT3G58630.1	21798944
AT5G64813.1	KRH27047	AT3G58630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59455	Soybean	cytosol	68.22	21.73
KRH43322	Soybean	cytosol	66.36	21.32
VIT_07s0031g01700.t01	Wine grape	cytosol	48.6	15.48
AT5G09910.1	Thale cress	cytosol	47.66	15.32
AT5G64813.1	Thale cress	cytosol	45.79	14.33
CDY18693	Canola	cytosol	45.79	14.33
CDX81260	Canola	cytosol	45.79	14.33
Bra037797.1-P	Field mustard	cytosol	45.79	14.33
GSMUA_Achr2P16850_001	Banana	cytosol	43.93	13.95
Solyc04g051700.2.1	Tomato	cytosol	42.99	13.81
PGSC0003DMT400080131	Potato	cytosol	42.99	13.77
GSMUA_Achr10P...	Banana	cytosol	42.06	13.47
VIT_18s0001g02170.t01	Wine grape	cytosol	42.06	13.43
CDY14513	Canola	plasma membrane	45.79	13.28
GSMUA_Achr6P00810_001	Banana	cytosol	41.12	13.02
EER91775	Sorghum	cytosol	41.12	12.98
CDY08848	Canola	cytosol	44.86	12.9
Bra024329.1-P	Field mustard	cytosol	44.86	12.87
Os10t0135200-01	Rice	cytosol	39.25	12.24
TraesCS1B01G205000.1	Wheat	cytosol	38.32	12.17
TraesCS1D01G166300.1	Wheat	cytosol	38.32	12.17
HORVU1Hr1G045310.7	Barley	cytosol	38.32	12.17
Os03t0242200-01	Rice	cytosol	35.51	11.24
TraesCS4A01G071800.1	Wheat	cytosol, plastid	35.51	11.21
EER95186	Sorghum	cytosol, plastid	35.51	11.21
Zm00001d047945_P002	Maize	cytosol, plastid	35.51	11.21
TraesCS4D01G228600.2	Wheat	cytosol	35.51	11.01
TraesCS4B01G227700.1	Wheat	cytosol	34.58	10.72
TraesCS1A01G172300.2	Wheat	cytosol	37.38	10.64
HORVU4Hr1G063900.7	Barley	cytosol	36.45	10.6
Zm00001d014330_P014	Maize	plastid	38.32	9.49

Protein Annotations

EMBL:ACUP02010460	EnsemblPlants:KRH04620	EnsemblPlantsGene:GLYMA_17G174700	ProteinID:KRH04620	ProteinID:KRH04620.1	UniParc:UPI00029650E5
UniProt:K7MM59	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:18205313..18207538

Molecular Weight (calculated)

12818.4 Da

IEP (calculated)

8.478

GRAVY (calculated)

-0.494

Length

107 amino acids

Sequence
(BLAST)

001: MKWQIMSYKI RCRDLPCFCI LLNGFHPIYS SYNGCDFYVG HLQAAKEARH DKEALVKFFC MLIRRRYFSD EIQIPSPAWS IPSVQRQAQR IDENFTEDDQ
101: SYNTRLR

Best Arabidopsis Sequence Match ( AT5G09910.4 )
(BLAST)

001: MRFWRERGRE NKEHMVAPLC GQIRVLVVGD SGVGKSSLVH LIVKGSSIVR PSQTIGCTVG VKHLTYASPA SSSSIIKGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR TTKTNLQKWA GEVSVTGEFS APLSSGGPGG LPVPYIVIGN KADIAAKGGT NGSSGNLVDA ARHWVEKQGL LPHSDELPLS
201: ESFPSNVGLI MAAKEARYDK EALTKIFHML IRRRYFSDEL PSPSSAWSLS HAPSQRLDEG TSDEDQFYKR TSLREGDAYK YNTLPQHNLM QSPTLYPQQP
301: PDRYNYAIPR FSLSSVEETS NGNGRSKRMD INV

Arabidopsis Description

LIP2Small GTPase-like protein LIP2 [Source:UniProtKB/Swiss-Prot;Acc:F4KFD8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.