Factsheet for Zm00001d047945_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003978_P001
Zm00001d011571_P001
Zm00001d016564_P001
Zm00001d030350_P001
Zm00001d038994_P001
Zm00001d043902_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64813.1	Zm00001d003978_P001	AT3G48550.1	21798944
AT5G64813.1	Zm00001d016564_P001	AT3G48550.1	21798944
AT5G64813.1	Zm00001d011571_P001	AT3G58630.1	21798944
AT5G64813.1	Zm00001d030350_P001	AT3G58630.1	21798944
AT5G64813.1	Zm00001d038994_P001	AT3G58630.1	21798944
AT5G64813.1	Zm00001d043902_P001	AT3G58630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95186	Sorghum	cytosol, plastid	95.28	95.28
TraesCS4A01G071800.1	Wheat	cytosol, plastid	82.3	82.3
Os03t0242200-01	Rice	cytosol	82.01	82.25
TraesCS4D01G228600.2	Wheat	cytosol	81.71	80.29
TraesCS4B01G227700.1	Wheat	cytosol	81.12	79.71
HORVU4Hr1G063900.7	Barley	cytosol	81.42	75.0
GSMUA_Achr2P16850_001	Banana	cytosol	65.19	65.58
GSMUA_Achr10P...	Banana	cytosol	64.6	65.57
PGSC0003DMT400080131	Potato	cytosol	62.24	63.17
Solyc04g051700.2.1	Tomato	cytosol	61.95	63.06
GSMUA_Achr6P00810_001	Banana	cytosol	62.24	62.43
KRH43322	Soybean	cytosol	61.06	62.16
KRH59455	Soybean	cytosol	61.36	61.9
VIT_18s0001g02170.t01	Wine grape	cytosol	60.77	61.49
VIT_07s0031g01700.t01	Wine grape	cytosol	60.77	61.31
AT5G64813.1	Thale cress	cytosol	61.06	60.53
Bra037797.1-P	Field mustard	cytosol	61.06	60.53
CDY18693	Canola	cytosol	60.47	59.94
CDX81260	Canola	cytosol	59.88	59.36
AT5G09910.1	Thale cress	cytosol	57.82	58.86
CDY14513	Canola	plasma membrane	63.42	58.27
CDY08848	Canola	cytosol	63.42	57.8
Bra024329.1-P	Field mustard	cytosol	63.13	57.37
Zm00001d014330_P014	Maize	plastid	69.91	54.86
KRH04620	Soybean	extracellular	11.21	35.51

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ProteinID:AQL08129.1	UniProt:B4FJG7	EMBL:BT037255	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	InterPro:P-loop_NTPase	PFAM:PF08477	PRINTS:PR00449
ScanProsite:PS00675	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF492	SMART:SM00175	SUPFAM:SSF52540
InterPro:Sigma_54_int_dom_ATP-bd_1	InterPro:Small_GTP-bd_dom	TIGRFAMs:TIGR00231	UniParc:UPI00017B6FF5	EnsemblPlantsGene:Zm00001d047945	EnsemblPlants:Zm00001d047945_P002
EnsemblPlants:Zm00001d047945_T002	SEG:seg	:	:	:	:

Description

Ras-related small GTP-binding family protein

Coordinates

chr9:-:145929375..145933615

Molecular Weight (calculated)

36922.6 Da

IEP (calculated)

9.744

GRAVY (calculated)

-0.351

Length

339 amino acids

Sequence
(BLAST)

001: MFWKDSGSRS SSGSGRDQNG VGPFGQVRVL IVGDSGVGKS SLVHLILKSS AIARPSQTVG CTVGIKHVTY GSAGGSSNNI SDAERNFFVE LWDVSGHERY
101: KACRSIFYTQ INGVIFVYDL SQRKTKTNLN KWAVEVAETG TFSAPLGSGG PGGLPVPYLV IANKVDIVPR DGARASRGNL VDLARQWAEK QGLLRCSEEL
201: PLTESFPGNS GLVSAAKQAR YDKEAVIKFF RLLIRRRYFS NEPPAPSPWS LAPREDTILP METLGDGADS FQRKSLSGEG FLYNGLVPLP AQRNLTPPPT
301: LNPQQPVSPL DNYRYHRFSS SSLPDVSSSR TSREDIINL

Best Arabidopsis Sequence Match ( AT5G64813.1 )
(BLAST)

001: MKFWRERERE NKEQILAPLC GQVRVLVVGD SGVGKTSLVH LINKGSSIVR PPQTIGCTVG VKHITYGSPA SSSSSIQGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGPGG LPVPYIVVGN KADIAAKEGT KGSSGNLVDA ARHWVEKQGL LPSSSEDLPL
201: FESFPGNGGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPAASPWSIS PVPTSSSQRL DEITSDDDQF YKRTSFHGDP YKYNNTIPPL PAQRNLTPPP
301: TLYPQQPVST PDNYTIPRYS LSSVQETTNN GSARSKRMDI NV

Arabidopsis Description

LIP1Small GTPase LIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.