CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67755
CDX68463
CDX71939
CDX98311
CDY60454
CDY70544

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64813.1	CDX68463	AT3G48550.1	21798944
AT5G64813.1	CDY60454	AT3G48550.1	21798944
AT5G64813.1	CDY70544	AT3G48550.1	21798944
AT5G64813.1	CDX67755	AT3G58630.1	21798944
AT5G64813.1	CDX71939	AT3G58630.1	21798944
AT5G64813.1	CDX98311	AT3G58630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024329.1-P	Field mustard	cytosol	94.62	94.37
CDY14513	Canola	plasma membrane	93.55	94.31
AT5G64813.1	Thale cress	cytosol	86.29	93.86
CDY18693	Canola	cytosol	84.14	91.52
CDX81260	Canola	cytosol	83.87	91.23
KRH59455	Soybean	cytosol	68.28	75.6
KRH43322	Soybean	cytosol	67.47	75.38
Solyc04g051700.2.1	Tomato	cytosol	67.2	75.08
PGSC0003DMT400080131	Potato	cytosol	66.94	74.55
VIT_07s0031g01700.t01	Wine grape	cytosol	66.4	73.51
GSMUA_Achr10P...	Banana	cytosol	65.05	72.46
VIT_18s0001g02170.t01	Wine grape	cytosol	64.52	71.64
GSMUA_Achr2P16850_001	Banana	cytosol	64.52	71.22
EER91775	Sorghum	cytosol	61.02	66.96
GSMUA_Achr6P00810_001	Banana	cytosol	60.48	66.57
Os10t0135200-01	Rice	cytosol	61.02	66.18
TraesCS1D01G166300.1	Wheat	cytosol	58.06	64.09
HORVU1Hr1G045310.7	Barley	cytosol	57.53	63.5
Zm00001d047945_P002	Maize	cytosol, plastid	57.8	63.42
TraesCS1B01G205000.1	Wheat	cytosol	56.99	62.91
EER95186	Sorghum	cytosol, plastid	57.26	62.83
Os03t0242200-01	Rice	cytosol	55.91	61.54
TraesCS4A01G071800.1	Wheat	cytosol, plastid	54.84	60.18
TraesCS4D01G228600.2	Wheat	cytosol	54.84	59.13
TraesCS4B01G227700.1	Wheat	cytosol	54.57	58.84
TraesCS1A01G172300.2	Wheat	cytosol	56.18	55.59
HORVU4Hr1G063900.7	Barley	cytosol	54.57	55.16
Zm00001d014330_P014	Maize	plastid	56.72	48.84
KRH04620	Soybean	extracellular	12.9	44.86

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078FAI7	UniProt:A0A078FAI7	EnsemblPlants:CDY08848	ProteinID:CDY08848
ProteinID:CDY08848.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00000815001	InterPro:P-loop_NTPase	PFAM:PF00071	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF492	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTPase	UniParc:UPI0004EDC275
SEG:seg	:	:	:	:	:

Description

BnaA06g23760DBnaA06g23760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FAI7]

Coordinates

chrLK031989:-:857719..860200

Molecular Weight (calculated)

41334.7 Da

IEP (calculated)

8.575

GRAVY (calculated)

-0.436

Length

372 amino acids

Sequence
(BLAST)

001: MKFWRERERE SKEQILAPLC GQVRVLIVGD SVMALVHVES LSLVIQVNHK LYVHVVDFNL FECVGKTSLV HLINKGSSIH RPSQTIGCTV GVKHITYGSP
101: ASSSSSIQGD AERDFFVELW DVSGHERYKD CRSLFYSQIN GVIFVHDLSQ RRTKTSLQKW ASEVAATGTF SAPLPSGGPG GLPVPYIVVG NKADIAAKEG
201: TKGSSGNLVD AARHWVEKQG LLSSSEELPL FESFPGNSGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE QPAASPWSIS PHRTSSSQRL DDEITSDDDQ
301: FYKRTSFHGD PYKYNNNTLP PLPAQRNLTP PPTLFPQQPV STPDNYAIPR FSLSSETSNN GSGRSKRMDI NV

Best Arabidopsis Sequence Match ( AT5G64813.1 )
(BLAST)

001: MKFWRERERE NKEQILAPLC GQVRVLVVGD SGVGKTSLVH LINKGSSIVR PPQTIGCTVG VKHITYGSPA SSSSSIQGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGPGG LPVPYIVVGN KADIAAKEGT KGSSGNLVDA ARHWVEKQGL LPSSSEDLPL
201: FESFPGNGGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPAASPWSIS PVPTSSSQRL DEITSDDDQF YKRTSFHGDP YKYNNTIPPL PAQRNLTPPP
301: TLYPQQPVST PDNYTIPRYS LSSVQETTNN GSARSKRMDI NV

Arabidopsis Description

LIP1Small GTPase LIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.