Factsheet for PGSC0003DMT400080131

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400020194
PGSC0003DMT400046599
PGSC0003DMT400052607

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64813.1	PGSC0003DMT400046599	AT3G48550.1	21798944
AT5G64813.1	PGSC0003DMT400020194	AT3G58630.1	21798944
AT5G64813.1	PGSC0003DMT400052607	AT3G58630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g051700.2.1	Tomato	cytosol	98.8	99.1
KRH59455	Soybean	cytosol	75.75	75.3
VIT_07s0031g01700.t01	Wine grape	cytosol	75.75	75.3
KRH43322	Soybean	cytosol	74.85	75.08
AT5G64813.1	Thale cress	cytosol	76.35	74.56
VIT_18s0001g02170.t01	Wine grape	cytosol	72.75	72.54
Bra037797.1-P	Field mustard	cytosol	73.05	71.34
CDY18693	Canola	cytosol	73.05	71.34
GSMUA_Achr2P16850_001	Banana	cytosol	71.86	71.22
GSMUA_Achr10P...	Banana	cytosol	70.66	70.66
CDX81260	Canola	cytosol	72.16	70.47
AT5G09910.1	Thale cress	cytosol	68.26	68.47
CDY14513	Canola	plasma membrane	75.45	68.29
Os10t0135200-01	Rice	cytosol	69.76	67.93
GSMUA_Achr6P00810_001	Banana	cytosol	68.56	67.75
Bra024329.1-P	Field mustard	cytosol	75.45	67.56
EER91775	Sorghum	cytosol	68.26	67.26
CDY08848	Canola	cytosol	74.55	66.94
TraesCS1D01G166300.1	Wheat	cytosol	66.17	65.58
HORVU1Hr1G045310.7	Barley	cytosol	65.27	64.69
TraesCS1B01G205000.1	Wheat	cytosol	64.97	64.39
Zm00001d047945_P002	Maize	cytosol, plastid	63.17	62.24
EER95186	Sorghum	cytosol, plastid	62.57	61.65
TraesCS4A01G071800.1	Wheat	cytosol, plastid	61.38	60.47
Os03t0242200-01	Rice	cytosol	61.08	60.35
TraesCS4D01G228600.2	Wheat	cytosol	60.78	58.84
TraesCS4B01G227700.1	Wheat	cytosol	60.48	58.55
TraesCS1A01G172300.2	Wheat	cytosol	62.57	55.59
HORVU4Hr1G063900.7	Barley	cytosol	60.48	54.89
Zm00001d014330_P014	Maize	plastid	62.28	48.15
KRH04620	Soybean	extracellular	13.77	42.99

Protein Annotations

EntrezGene:102595110	Gene3D:3.40.50.300	MapMan:35.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:M1D317	InterPro:P-loop_NTPase
PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG402031196	PGSC:PGSC0003DMG402031196	EnsemblPlants:PGSC0003DMT400080131	PRINTS:PR00449	ScanProsite:PS00675
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF492	SMART:SM00175	SUPFAM:SSF52540	InterPro:Sigma_54_int_dom_ATP-bd_1
InterPro:Small_GTPase	UniParc:UPI0002964244	RefSeq:XP_006367391.1	SEG:seg	:	:

Description

GTP-binding protein yptv3 [Source:PGSC_GENE;Acc:PGSC0003DMG402031196]

Coordinates

chr4:-:54606655..54614362

Molecular Weight (calculated)

36733.3 Da

IEP (calculated)

8.939

GRAVY (calculated)

-0.496

Length

334 amino acids

Sequence
(BLAST)

001: MMFWRERERE TKEQNGGPPC GQVRVLVVGD SGVGKTSLVH LILNGSSIVR PPQTIGCTVG VKHTTYGNSG SSSTSIKGDA ERDFFIELWD ISGHDHYKDC
101: RSLFYSQING VIFVYDLSQR RTKTSLQKWA VEIATAGTFS APLASGGPGG LPVPYIVIGN KADIATNEGV RGSSGNLVDM ARQWVEKQGL LPSSEEIPLT
201: ESFPGGGGLI SAAKGARYDK EAVMKFFRML IRRRYFSDDL PGNHWSSPVQ KPLHGSSEIS NDDDHLYKSK SSSYIGDSYK YNTLPPLPAQ RNLTPPPTLY
301: PQQPMSTPDN YSIPRFASTQ DMSSARYKRS DINV

Best Arabidopsis Sequence Match ( AT5G64813.1 )
(BLAST)

001: MKFWRERERE NKEQILAPLC GQVRVLVVGD SGVGKTSLVH LINKGSSIVR PPQTIGCTVG VKHITYGSPA SSSSSIQGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGPGG LPVPYIVVGN KADIAAKEGT KGSSGNLVDA ARHWVEKQGL LPSSSEDLPL
201: FESFPGNGGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPAASPWSIS PVPTSSSQRL DEITSDDDQF YKRTSFHGDP YKYNNTIPPL PAQRNLTPPP
301: TLYPQQPVST PDNYTIPRYS LSSVQETTNN GSARSKRMDI NV

Arabidopsis Description

LIP1Small GTPase LIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.