Factsheet for Bra024329.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plasma membrane 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003346.1-P
Bra007407.1-P
Bra018049.1-P
Bra029904.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64813.1	Bra018049.1-P	AT3G48550.1	21798944
AT5G64813.1	Bra029904.1-P	AT3G48550.1	21798944
AT5G64813.1	Bra003346.1-P	AT3G58630.1	21798944
AT5G64813.1	Bra007407.1-P	AT3G58630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14513	Canola	plasma membrane	97.05	98.1
AT5G64813.1	Thale cress	cytosol	86.86	94.74
CDY08848	Canola	cytosol	94.37	94.62
Bra037797.1-P	Field mustard	cytosol	84.72	92.4
KRH59455	Soybean	cytosol	68.9	76.49
KRH43322	Soybean	cytosol	68.1	76.28
Solyc04g051700.2.1	Tomato	cytosol	67.83	75.98
PGSC0003DMT400080131	Potato	cytosol	67.56	75.45
VIT_07s0031g01700.t01	Wine grape	cytosol	67.02	74.4
GSMUA_Achr10P...	Banana	cytosol	65.42	73.05
VIT_18s0001g02170.t01	Wine grape	cytosol	65.15	72.54
GSMUA_Achr2P16850_001	Banana	cytosol	64.88	71.81
EER91775	Sorghum	cytosol	61.39	67.55
GSMUA_Achr6P00810_001	Banana	cytosol	60.86	67.16
Os10t0135200-01	Rice	cytosol	61.39	66.76
TraesCS1D01G166300.1	Wheat	cytosol	58.45	64.69
TraesCS1B01G205000.1	Wheat	cytosol	57.37	63.5
HORVU1Hr1G045310.7	Barley	cytosol	57.37	63.5
Zm00001d047945_P002	Maize	cytosol, plastid	57.37	63.13
EER95186	Sorghum	cytosol, plastid	56.84	62.54
Os03t0242200-01	Rice	cytosol	56.03	61.83
TraesCS4A01G071800.1	Wheat	cytosol, plastid	54.96	60.47
TraesCS4D01G228600.2	Wheat	cytosol	54.96	59.42
TraesCS4B01G227700.1	Wheat	cytosol	54.69	59.13
TraesCS1A01G172300.2	Wheat	cytosol	56.3	55.85
HORVU4Hr1G063900.7	Barley	cytosol	54.69	55.43
Zm00001d014330_P014	Maize	plastid	56.84	49.07
KRH04620	Soybean	extracellular	12.87	44.86

Protein Annotations

EnsemblPlants:Bra024329.1	EnsemblPlants:Bra024329.1-P	EnsemblPlantsGene:Bra024329	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase
InterPro:Small_GTPase	PANTHER:PTHR24073	PANTHER:PTHR24073:SF492	PFAM:PF00071	PFscan:PS51419	SEG:seg
SMART:SM00175	SUPFAM:SSF52540	UniParc:UPI000253F47F	UniProt:M4E6C5	MapMan:35.1	:

Description

AT5G64813 (E=6e-137) LIP1 | LIP1 (Light Insensitive Period1); GTPase

Coordinates

chrA06:+:15011141..15013098

Molecular Weight (calculated)

41324.8 Da

IEP (calculated)

8.575

GRAVY (calculated)

-0.414

Length

373 amino acids

Sequence
(BLAST)

001: MKFWRERERE SKEQILAPLC GQVRVLVVGD SVMAHVHVES WSLVIQIGIY TWTLMLDLIV CGSGVGKTSL VHLINKGSSI HRPSQTIGCT VGVKHITYGS
101: PASSSSSIQG DAERDFFVEL WDVSGHERYK DCRSLFYSQI NGVIFVHDLS QRRTKTSLQK WASEVAATGT FSAPLPSGGP GGLPVPYIVV GNKADIAAKE
201: GTKGSSGNLV DAARHWVEKQ GLLSSSEELP LFESFPGNSG LIAAAKETRY DKEALNKFFR MLIRRRYFSD EQPAASPWSI SPHRTSSSQR LDDEITSDDD
301: QFYKRTSFHG DPYKYNNNTL PPLPAQRNLT PPPTLFPQQP VSTPDNYVIP RFSLSSETSN NGSGRSKRMD INV

Best Arabidopsis Sequence Match ( AT5G64813.1 )
(BLAST)

001: MKFWRERERE NKEQILAPLC GQVRVLVVGD SGVGKTSLVH LINKGSSIVR PPQTIGCTVG VKHITYGSPA SSSSSIQGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGPGG LPVPYIVVGN KADIAAKEGT KGSSGNLVDA ARHWVEKQGL LPSSSEDLPL
201: FESFPGNGGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPAASPWSIS PVPTSSSQRL DEITSDDDQF YKRTSFHGDP YKYNNTIPPL PAQRNLTPPP
301: TLYPQQPVST PDNYTIPRYS LSSVQETTNN GSARSKRMDI NV

Arabidopsis Description

LIP1Small GTPase LIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.