CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES03423
EES05120
EES12026
EES18672

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64813.1	EES05120	AT3G48550.1	21798944
AT5G64813.1	EES12026	AT3G48550.1	21798944
AT5G64813.1	EES03423	AT3G58630.1	21798944
AT5G64813.1	EES18672	AT3G58630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0135200-01	Rice	cytosol	89.68	88.63
TraesCS1D01G166300.1	Wheat	cytosol	83.19	83.68
TraesCS1B01G205000.1	Wheat	cytosol	82.89	83.38
HORVU1Hr1G045310.7	Barley	cytosol	82.01	82.49
EER95186	Sorghum	cytosol, plastid	76.7	76.7
GSMUA_Achr10P...	Banana	cytosol	69.91	70.96
TraesCS1A01G172300.2	Wheat	cytosol	78.47	70.74
GSMUA_Achr2P16850_001	Banana	cytosol	68.44	68.84
Zm00001d014330_P014	Maize	plastid	87.02	68.29
PGSC0003DMT400080131	Potato	cytosol	67.26	68.26
Solyc04g051700.2.1	Tomato	cytosol	66.96	68.17
KRH43322	Soybean	cytosol	66.08	67.27
GSMUA_Achr6P00810_001	Banana	cytosol	66.96	67.16
KRH59455	Soybean	cytosol	66.08	66.67
AT5G64813.1	Thale cress	cytosol	66.67	66.08
VIT_07s0031g01700.t01	Wine grape	cytosol	65.49	66.07
CDY18693	Canola	cytosol	65.78	65.2
VIT_18s0001g02170.t01	Wine grape	cytosol	64.31	65.07
CDX81260	Canola	cytosol	65.49	64.91
Bra037797.1-P	Field mustard	cytosol	65.19	64.62
AT5G09910.1	Thale cress	cytosol	63.13	64.26
CDY14513	Canola	plasma membrane	67.55	62.06
Bra024329.1-P	Field mustard	cytosol	67.55	61.39
CDY08848	Canola	cytosol	66.96	61.02
KRH04620	Soybean	extracellular	12.98	41.12

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8083593	UniProt:C5WP79	EnsemblPlants:EER91775	ProteinID:EER91775
ProteinID:EER91775.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF492	SMART:SM00173	SMART:SM00175	EnsemblPlantsGene:SORBI_3001G270800	SUPFAM:SSF52540
InterPro:Small_GTPase	UniParc:UPI0001A8224C	RefSeq:XP_002464777.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:52223275..52230267

Molecular Weight (calculated)

36785.4 Da

IEP (calculated)

9.625

GRAVY (calculated)

-0.428

Length

339 amino acids

Sequence
(BLAST)

001: MMFWKDGGGT GGGNGRDLSG GPPCGQVRVL VVGDSGVGKS SLVHLLLKGS AVARPAQTIG CAVGVKHITY SSPGSSSNSI KGDAERNFFV ELWDVSGHER
101: YKDCRSLFYS QINGVIFVYD LSQRKTKTNL NKWAVEVAES GTFSAPLGSG GPGGLPVPYL VIANKVDIAP RDGRRVSSGN LVDVARQWVE KQGLLPSSEE
201: LPLADSFPGN SGLLTAAKEG RYDKEALIKF FRMLIRRRYF SNELPAPSPW SLTPREDTIL PVESVNDDDM FQRKSYGGQS YKYNGVAPLP AQRNLTPPPT
301: LYPQQPMSSS SENYRYHRFS SSSIPDSSGG RTSRANLNI

Best Arabidopsis Sequence Match ( AT5G64813.1 )
(BLAST)

001: MKFWRERERE NKEQILAPLC GQVRVLVVGD SGVGKTSLVH LINKGSSIVR PPQTIGCTVG VKHITYGSPA SSSSSIQGDS ERDFFVELWD VSGHERYKDC
101: RSLFYSQING VIFVHDLSQR RTKTSLQKWA SEVAATGTFS APLPSGGPGG LPVPYIVVGN KADIAAKEGT KGSSGNLVDA ARHWVEKQGL LPSSSEDLPL
201: FESFPGNGGL IAAAKETRYD KEALNKFFRM LIRRRYFSDE LPAASPWSIS PVPTSSSQRL DEITSDDDQF YKRTSFHGDP YKYNNTIPPL PAQRNLTPPP
301: TLYPQQPVST PDNYTIPRYS LSSVQETTNN GSARSKRMDI NV

Arabidopsis Description

LIP1Small GTPase LIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.